Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 1.6e-274 948.7 462 100.0
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 6.4e-271 936.8 462 98.3
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 2.0e-264 915.2 462 94.6
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 3.4e-264 914.4 462 96.1
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 1.1e-262 909.4 462 94.8
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 2.5e-259 898.3 474 92.6
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 2.1e-258 895.2 474 92.4
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 2.8e-258 894.8 474 92.2
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 2.3e-257 891.7 474 92.0
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 3.9e-252 874.4 463 92.4
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 9.9e-248 859.8 461 87.6
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 2.4e-238 828.6 462 85.3
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 7.9e-237 823.5 460 83.7
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 2.8e-234 815.1 462 82.7
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 3.6e-234 814.7 462 82.3
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 4.8e-234 814.3 462 82.9
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 1.1e-233 813.1 462 82.5
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 1.4e-233 812.8 465 81.7
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 1.2e-232 809.7 460 82.0
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 1.2e-232 809.7 462 83.1
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.0e-232 808.9 461 83.1
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 2.6e-232 808.5 462 82.9
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 2.6e-232 808.5 462 82.9
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 3.4e-232 808.1 462 82.9
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 1.7e-231 805.8 462 81.2
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.8e-231 804.7 462 81.8
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 4.9e-231 804.3 462 81.0
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.9e-230 802.4 462 82.3
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 1.2e-229 799.7 462 81.4
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 3.5e-229 798.1 462 81.2
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 7.9e-229 797.0 462 81.6
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.0e-228 796.6 465 80.2
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 1.0e-228 796.6 487 78.0
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 2.3e-228 795.4 476 80.0
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 2.3e-228 795.4 462 82.0
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 3.0e-228 795.0 462 81.0
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 3.0e-228 795.0 462 81.4
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 3.9e-228 794.7 462 80.5
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 8.7e-228 793.5 469 80.6
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 8.7e-228 793.5 462 82.0
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 1.5e-227 792.7 462 81.6
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 3.3e-227 791.6 459 81.7
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 4.3e-227 791.2 462 81.8
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 5.6e-227 790.8 462 79.7
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 7.4e-227 790.4 467 79.9
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 9.6e-227 790.0 462 80.3
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 9.6e-227 790.0 485 78.1
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 8.1e-226 786.9 462 81.4
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 9.0e-225 783.5 462 79.9
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 1.2e-224 783.1 399 95.2
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 1.2e-224 783.1 462 80.3
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.5e-224 782.7 462 79.2
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 3.4e-224 781.6 460 80.2
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 1.9e-222 775.8 460 79.3
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 5.5e-222 774.2 463 79.0
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 5.5e-222 774.2 527 72.3
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.2e-221 773.1 462 78.1
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 1.3e-220 769.6 463 78.2
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 6.7e-220 767.3 469 78.0
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.9e-219 765.8 462 78.6
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 1.9e-219 765.8 462 77.9
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 2.5e-219 765.4 462 77.9
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 5.7e-219 764.2 422 87.0
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 2.1e-218 762.3 462 78.1
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 4.8e-218 761.1 462 77.9
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 1.1e-217 760.0 462 79.2
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 2.4e-217 758.8 469 79.1
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 2.0e-216 755.7 462 77.1
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 2.0e-216 755.7 462 77.5
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 2.6e-216 755.4 574 66.6
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 5.0e-215 751.1 464 76.1
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 1.1e-214 750.0 460 77.8
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 4.2e-214 748.0 429 83.2
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.3e-212 743.0 484 74.4
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 1.3e-212 743.0 495 74.5
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 1.8e-212 742.7 549 66.8
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 2.3e-212 742.3 475 75.6
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 2.3e-212 742.3 462 75.8
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 1.9e-211 739.2 462 75.5
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 2.4e-209 732.3 460 75.2
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.4e-209 732.3 422 82.2
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.4e-208 728.4 473 74.6
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 1.1e-206 723.4 440 78.4
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.6e-205 718.0 462 75.3
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 1.5e-203 713.0 465 74.8
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.0e-203 712.6 466 74.9
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 3.7e-202 708.4 465 74.6
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 4.5e-200 701.4 463 73.2
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 2.2e-194 682.6 422 76.3
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 4.1e-193 678.3 531 62.1
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 9.1e-193 677.2 425 75.3
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 1.6e-192 676.4 464 69.8
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 8.5e-191 670.6 469 67.2
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 1.0e-188 663.7 379 81.5
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.8e-180 636.3 369 80.2
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 6.6e-167 591.3 355 77.7
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 3.5e-160 568.9 351 78.1
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 3.0e-159 565.8 457 61.7
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 3.1e-156 555.8 354 74.6
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 6.8e-156 554.7 459 64.3
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.4e-145 520.4 318 78.0
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 3.6e-141 505.8 482 56.4
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 2.1e-136 490.0 310 72.3
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 1.9e-126 456.8 266 81.2
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.1e-119 432.2 267 77.5
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.6e-109 400.6 240 79.6
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.6e-96 357.5 462 43.5
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 1.1e-92 344.7 455 41.1
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.8e-79 300.8 221 68.3
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 3.0e-79 300.1 479 37.4
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.4e-76 291.2 175 80.6
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 4.0e-71 273.1 177 73.4
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.6e-64 251.1 125 87.2
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.0e-54 217.6 189 63.0
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 5.9e-51 206.1 121 81.0
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.1e-31 142.1 104 60.6
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 6.8e-31 139.4 420 30.2
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 7.8e-27 125.9 451 25.5
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.0e-26 124.0 63 84.1
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.9e-25 121.3 433 26.8
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 2.4e-23 114.4 69 81.2
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 6.8e-23 112.8 82 68.3
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 2.2e-21 107.8 64 71.9
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 2.2e-21 107.8 82 65.9
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 2.5e-17 94.4 59 76.3
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 8.1e-16 89.4 66 68.2
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 1.8e-15 88.2 56 80.4
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 4.6e-11 73.6 41 80.5
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 6.0e-11 73.2 35 88.6
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 3.9e-10 70.5 36 83.3
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 1.1e-09 68.9 157 28.7
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 1.9e-09 68.2 36 86.1
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 3.3e-09 67.4 36 80.6
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 5.6e-09 66.6 41 73.2
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 2.1e-08 64.7 35 77.1
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.1e-07 62.4 393 22.1
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 2.4e-07 61.2 42 71.4
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.5e-06 58.5 413 20.6
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 7.6e-06 56.2 137 27.0
Haze_26576 Corylus avellana HOM05D003206 ORTHO05D164003 9.9e-06 55.8 151 29.1


User provided reference genes

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