Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 3.6e-146 521.5 261 100.0
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 1.2e-117 426.8 268 82.8
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 3.5e-109 398.7 264 79.5
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 2.4e-105 386.0 266 75.6
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 7.9e-101 370.9 267 75.7
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 6.9e-97 357.8 264 75.8
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 5.9e-88 328.2 271 67.9
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 1.7e-87 326.6 271 67.2
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 1.7e-87 326.6 271 67.2
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 1.7e-87 326.6 271 67.9
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 3.8e-87 325.5 263 66.5
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 3.8e-87 325.5 263 66.5
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 3.8e-87 325.5 263 66.5
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 4.6e-85 318.5 264 66.3
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 4.6e-85 318.5 264 66.3
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 2.8e-82 309.3 264 65.5
BcaNung00532 Brassica carinata HOM05D003020 ORTHO05D003226 6.1e-69 265.0 224 65.2
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 1.7e-63 246.9 274 54.0
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 2.3e-60 236.5 294 51.4
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 6.1e-53 211.8 251 53.8
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 5.7e-35 152.1 260 41.9
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 7.5e-35 151.8 269 41.6
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 7.5e-35 151.8 254 42.9
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 1.3e-34 151.0 261 43.7
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 3.7e-34 149.4 261 40.6
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 6.4e-34 148.7 261 41.0
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 1.1e-33 147.9 264 40.9
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 2.4e-33 146.7 253 42.3
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 5.4e-33 145.6 283 41.0
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 9.2e-33 144.8 252 41.3
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 2.7e-32 143.3 249 41.8
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.0e-31 141.4 252 40.5
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.3e-31 140.2 254 39.8
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 3.9e-31 139.4 255 42.4
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 6.6e-31 138.7 253 41.1
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 1.6e-29 134.0 244 41.0
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.1e-29 133.7 242 39.7
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 2.1e-29 133.7 255 42.4
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 8.0e-29 131.7 246 41.1
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 1.0e-28 131.3 246 39.4
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 6.8e-28 128.6 247 38.5
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 8.9e-28 128.3 279 36.6
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 8.9e-28 128.3 251 37.8
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 1.2e-27 127.9 250 36.0
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 1.5e-27 127.5 249 39.4
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 2.6e-27 126.7 295 39.0
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 4.4e-27 125.9 271 38.0
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 4.4e-27 125.9 273 37.4
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 5.8e-27 125.6 254 38.2
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 2.9e-26 123.2 248 39.5
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 2.9e-26 123.2 239 41.0
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 2.9e-26 123.2 226 39.8
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 3.7e-26 122.9 253 38.7
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 8.3e-26 121.7 279 38.4
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 1.4e-25 120.9 279 37.6
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 1.4e-25 120.9 256 40.2
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.9e-25 120.6 248 39.1
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 1.9e-25 120.6 242 38.8
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.2e-25 119.8 256 39.8
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 4.1e-25 119.4 246 37.4
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 5.4e-25 119.0 258 38.0
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 7.0e-25 118.6 246 39.8
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 7.0e-25 118.6 248 37.9
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 7.0e-25 118.6 279 37.6
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 9.2e-25 118.2 255 39.2
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 1.6e-24 117.5 291 36.8
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 2.0e-24 117.1 262 38.5
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 6.0e-24 115.5 256 36.7
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 6.0e-24 115.5 256 36.7
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.0e-24 115.5 256 38.3
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 1.0e-23 114.8 247 36.0
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-23 113.6 256 37.9
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 8.6e-23 111.7 258 36.0
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 8.6e-23 111.7 266 34.6
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.3e-22 109.8 261 36.4
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.3e-22 109.8 244 35.7
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.2e-21 107.8 160 44.4
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.2e-21 107.8 252 39.3
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 2.8e-21 106.7 249 33.7
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 4.7e-21 105.9 253 34.4
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 6.2e-21 105.5 247 33.2
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 1.4e-20 104.4 272 33.1
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 2.3e-20 103.6 244 35.2
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 3.1e-20 103.2 214 36.0
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 6.8e-20 102.1 259 37.1
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 6.8e-20 102.1 269 34.6
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 1.2e-19 101.3 229 33.2
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.5e-19 100.9 267 34.1
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 1.3e-18 97.8 204 38.7
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 2.2e-18 97.1 236 36.9
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.7e-18 96.3 271 34.7
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 4.9e-18 95.9 247 35.6
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 6.4e-18 95.5 249 34.9
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 6.4e-18 95.5 257 35.0
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 6.4e-18 95.5 249 32.9
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 1.1e-17 94.7 266 31.2
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.1e-17 94.7 266 32.0
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.9e-17 94.0 258 35.3
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.2e-17 93.2 250 34.8
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 3.2e-17 93.2 243 32.5
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.2e-17 93.2 254 33.9
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 3.9e-15 86.3 258 32.9
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.1e-14 84.7 253 31.6
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.9e-14 84.0 238 30.7
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 3.3e-14 83.2 247 30.4
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.3e-14 82.8 239 30.1
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 9.5e-14 81.6 254 33.5
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 9.5e-14 81.6 254 33.5
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.2e-13 81.3 261 29.1
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.8e-13 80.1 252 31.0
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 3.6e-13 79.7 278 29.1
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 4.7e-13 79.3 200 34.0
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 1.8e-12 77.4 278 30.6
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 6.8e-12 75.5 202 32.2
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 1.5e-11 74.3 256 30.5
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 5.8e-11 72.4 240 28.3
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 1.3e-10 71.2 234 29.9
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 2.2e-10 70.5 234 29.5
Glyma.20G178000 Glycine max HOM05D003020 ORTHO05D003226 1.4e-09 67.8 244 28.7
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.4e-09 65.9 262 29.4
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 7.1e-09 65.5 270 28.5
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 9.2e-09 65.1 264 30.3
Hma1.2p1_2080F.1_g313480 Hydrangea macrophylla HOM05D011460 ORTHO05D010383 1.2e-08 64.7 209 28.7
Migut.K00242 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.5e-08 63.2 249 28.1
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 4.6e-08 62.8 226 29.6
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.0e-08 62.4 262 30.2
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 6.0e-08 62.4 258 29.8
PGR044G1634 Punica granatum HOM05D003020 ORTHO05D003226 7.8e-08 62.0 276 27.2
Sed0002867 Sechium edule HOM05D003020 ORTHO05D003226 7.8e-08 62.0 252 29.4
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 7.8e-08 62.0 246 27.6
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 1.0e-07 61.6 267 28.5
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 1.0e-07 61.6 270 25.9
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 2.3e-07 60.5 241 28.2
Thecc.10G069600 Theobroma cacao HOM05D010162 ORTHO05D010383 6.6e-07 58.9 244 28.3
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 1.1e-06 58.2 243 27.2
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 1.5e-06 57.8 263 29.3
EL10Ac8g18285 Beta vulgaris HOM05D003020 ORTHO05D003226 1.9e-06 57.4 162 35.2
Glyma.10G213000 Glycine max HOM05D003020 ORTHO05D003226 1.9e-06 57.4 248 28.6
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 1.9e-06 57.4 259 27.4
Ah.14g083800 Amaranthus hybridus HOM05D003020 ORTHO05D003226 2.5e-06 57.0 136 32.4
Sc18g0007500 Simmondsia chinensis HOM05D003020 ORTHO05D003226 3.3e-06 56.6 259 26.3
HPP92_010749 Vanilla planifolia HOM05D023015 ORTHO05D003226 3.3e-06 56.6 72 40.3
Actinidia02963 Actinidia chinensis HOM05D003020 ORTHO05D003226 4.3e-06 56.2 231 25.5
CsaV3_5G025940 Cucumis sativus L. HOM05D003020 ORTHO05D003226 5.6e-06 55.8 213 28.6
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 7.3e-06 55.5 213 30.0
Migut.F01762 Erythranthe guttata HOM05D003020 ORTHO05D003226 9.6e-06 55.1 214 29.0
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 9.6e-06 55.1 242 28.5
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 9.6e-06 55.1 199 27.6


User provided reference genes

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