Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30180 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 2.5e-73 278.9 159 100.0
AL7G22010 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 1.2e-64 250.0 157 87.3
Thhalv10026906m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 1.0e-63 246.9 162 82.1
Carub.0007s1043 Capsella rubella HOM05D007765 ORTHO05D009826 3.0e-63 245.4 160 82.5
CARHR238080 Cardamine hirsuta HOM05D007765 ORTHO05D009826 5.2e-63 244.6 162 80.9
BcaNung04419 Brassica carinata HOM05D007765 ORTHO05D009826 2.3e-58 229.2 164 79.3
Sp7g28050 Schrenkiella parvula HOM05D007765 ORTHO05D009826 2.9e-58 228.8 163 83.4
BcaC09g51800 Brassica carinata HOM05D007765 ORTHO05D009826 1.1e-57 226.9 163 85.3
C01p08880 Brassica napus HOM05D007765 ORTHO05D009826 1.1e-57 226.9 163 85.3
BolC1t00878H Brassica oleracea HOM05D007765 ORTHO05D009826 1.1e-57 226.9 163 85.3
A01p07960 Brassica napus HOM05D007765 ORTHO05D009826 3.3e-57 225.3 163 84.0
BraA01t00741Z Brassica rapa HOM05D007765 ORTHO05D009826 5.5e-57 224.6 163 83.4
BcaB03g12635 Brassica carinata HOM05D007765 ORTHO05D009826 1.1e-52 210.3 163 74.2
A08p19380 Brassica napus HOM05D007765 ORTHO05D009826 7.0e-52 207.6 163 80.4
BraA08t33899Z Brassica rapa HOM05D007765 ORTHO05D009826 7.0e-52 207.6 163 80.4
C03p88840 Brassica napus HOM05D007765 ORTHO05D009826 5.9e-51 204.5 163 79.1
BolC3t21196H Brassica oleracea HOM05D007765 ORTHO05D009826 5.9e-51 204.5 163 79.1
AT2G18969 Arabidopsis thaliana HOM05D007765 ORTHO05D009826 2.8e-48 195.7 175 64.6
Sp3g32420 Schrenkiella parvula HOM05D007765 ORTHO05D009826 1.4e-47 193.4 167 65.9
AL3G52940 Arabidopsis lyrata HOM05D007765 ORTHO05D009826 3.1e-47 192.2 173 64.7
Thhalv10022885m.g Eutrema salsugineum HOM05D007765 ORTHO05D009826 1.7e-45 186.4 167 63.5
Carub.0003s3320 Capsella rubella HOM05D007765 ORTHO05D009826 8.3e-45 184.1 173 60.7
BolC9t54340H Brassica oleracea HOM05D007765 ORTHO05D009826 1.0e-42 177.2 165 60.6
A09p12150 Brassica napus HOM05D007765 ORTHO05D009826 3.0e-42 175.6 165 60.0
C09p14370 Brassica napus HOM05D007765 ORTHO05D009826 3.0e-42 175.6 165 60.0
BraA09t36859Z Brassica rapa HOM05D007765 ORTHO05D009826 3.0e-42 175.6 165 60.0
CARHR109510 Cardamine hirsuta HOM05D007765 ORTHO05D009826 5.0e-42 174.9 174 59.2
BcaC04g22872 Brassica carinata HOM05D007765 ORTHO05D009826 8.6e-42 174.1 165 60.0
BcaB07g31628 Brassica carinata HOM05D007765 ORTHO05D009826 4.7e-40 168.3 164 57.3
THA.LOC104819971 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.8e-39 166.4 169 58.6
THA.LOC104803946 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.2e-38 163.7 174 57.5
THA.LOC104803486 Tarenaya hassleriana HOM05D007765 ORTHO05D009826 1.1e-31 140.6 172 52.3
BcaC04g20459 Brassica carinata HOM05D007765 ORTHO05D009826 1.4e-23 113.6 82 76.8
Aa31LG8G16060 Aethionema arabicum HOM05D007765 ORTHO05D009826 3.8e-21 105.5 158 49.4
TPR.G5381 Trifolium pratense HOM05D007765 ORTHO05D009826 1.9e-20 103.2 168 38.1
Ca_21240_v3 Cicer arietinum L. HOM05D007139 ORTHO05D009171 4.2e-20 102.1 149 41.6
Dinv41219 Davidia involucrata HOM05D007765 ORTHO05D009826 7.1e-20 101.3 194 37.6
BcaB03g16695 Brassica carinata HOM05D007765 ORTHO05D009826 2.1e-19 99.8 104 55.8
BcaC06g36508 Brassica carinata HOM05D007765 ORTHO05D009826 3.0e-18 95.9 102 53.9
CiPaw.07G194200 Carya illinoinensis HOM05D007765 ORTHO05D009826 6.6e-18 94.7 226 38.5
QL11p005142 Quercus lobata HOM05D007765 ORTHO05D009826 6.6e-18 94.7 206 34.5
Medtr4g127700 Medicago truncatula HOM05D007765 ORTHO05D009826 1.1e-17 94.0 149 39.6
arahy.Tifrunner.gnm1.ann1.8SXC5S Arachis hypogaea HOM05D007765 ORTHO05D009826 1.5e-17 93.6 154 38.3
Gohir.D13G216400 Gossypium hirsutum HOM05D007765 ORTHO05D009826 1.5e-17 93.6 158 40.5
Gorai.013G246700 Gossypium raimondii HOM05D007765 ORTHO05D009826 4.3e-17 92.0 158 40.5
Gohir.A13G212300 Gossypium hirsutum HOM05D007765 ORTHO05D009826 1.3e-16 90.5 158 40.5
Lalb_Chr18g0052451 Lupinus albus HOM05D007765 ORTHO05D009826 2.1e-16 89.7 171 36.3
TPR.G9240 Trifolium pratense HOM05D007765 ORTHO05D009826 4.8e-16 88.6 170 35.9
Medtr2g036670 Medicago truncatula HOM05D007765 ORTHO05D009826 8.1e-16 87.8 175 33.7
Sed0013776 Sechium edule HOM05D007765 ORTHO05D009826 1.4e-15 87.0 167 34.1
Lj6g0023329 Lotus japonicus HOM05D007765 ORTHO05D009826 1.8e-15 86.7 171 35.1
Lalb_Chr12g0199471 Lupinus albus HOM05D007765 ORTHO05D009826 2.4e-15 86.3 173 35.3
Lj4g0004123 Lotus japonicus HOM05D007765 ORTHO05D009826 3.1e-15 85.9 202 30.2
Phvul.003G143700 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 4.0e-15 85.5 209 32.5
Phvul.009G238800 Phaseolus vulgaris HOM05D007765 ORTHO05D009826 4.0e-15 85.5 186 32.3
Glyma.15G162800 Glycine max HOM05D007765 ORTHO05D009826 1.2e-14 84.0 186 33.3
TAR383G0713 Trochodendron aralioides HOM05D007765 ORTHO05D009826 1.2e-14 84.0 214 33.6
arahy.Tifrunner.gnm1.ann1.YM1G3Q Arachis hypogaea HOM05D007765 ORTHO05D009826 2.6e-14 82.8 175 41.1
Glyma.17G061700 Glycine max HOM05D007765 ORTHO05D009826 3.4e-14 82.4 205 32.2
VMungo1309G2639 Vigna mungo HOM05D007765 ORTHO05D009826 3.4e-14 82.4 186 34.4
Atru.chr7.847 Acer truncatum HOM05D007765 ORTHO05D009826 4.4e-14 82.0 199 32.7
CsaV3_2G008530 Cucumis sativus L. HOM05D007765 ORTHO05D009826 5.8e-14 81.6 183 29.5
Glyma.09G056600 Glycine max HOM05D007765 ORTHO05D009826 5.8e-14 81.6 199 29.6
Potri.018G090200 Populus trichocarpa HOM05D007765 ORTHO05D009826 1.7e-13 80.1 210 31.4
Duzib150G0923 Durio zibethinus HOM05D007765 ORTHO05D009826 4.9e-13 78.6 219 32.0
FAN22G0698 Fragaria x ananassa HOM05D007765 ORTHO05D009826 6.4e-13 78.2 204 32.8
Glyma.13G098000 Glycine max HOM05D007765 ORTHO05D009826 8.4e-13 77.8 208 31.2
ClCG11G011990 Citrullus lanatus HOM05D007765 ORTHO05D009826 1.1e-12 77.4 194 29.4
Sabra18G0077700 Salix brachista HOM05D007765 ORTHO05D009826 1.1e-12 77.4 212 31.1
FAN12G2617 Fragaria x ananassa HOM05D007765 ORTHO05D009826 3.2e-12 75.9 207 31.4
Lalb_Chr20g0116301 Lupinus albus HOM05D007765 ORTHO05D009826 4.2e-12 75.5 205 30.7
RcHm_v2.0_Chr4g0400891 Rosa chinensis HOM05D007765 ORTHO05D009826 4.2e-12 75.5 202 31.2
Prupe.1G081900 Prunus persica HOM05D007765 ORTHO05D009826 7.1e-12 74.7 197 34.0
FvH4_4g07800 Fragaria vesca HOM05D007765 ORTHO05D009826 9.3e-12 74.3 207 31.4
Dinv19560 Davidia involucrata HOM05D007765 ORTHO05D009826 4.6e-11 72.0 194 30.9
COL.COLO4_36375 Corchorus olitorius HOM05D007765 ORTHO05D009826 7.9e-11 71.2 193 32.1
FAN07G1496 Fragaria x ananassa HOM05D007765 ORTHO05D009826 1.0e-10 70.9 206 30.6
FAN17G2229 Fragaria x ananassa HOM05D007765 ORTHO05D009826 1.3e-10 70.5 207 30.9
MBI14_g08141_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 1.3e-10 70.5 223 27.4
Psat1g146600 Pisum sativum HOM05D007765 ORTHO05D009826 6.6e-10 68.2 74 48.6
THA.LOC104804916 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.6e-08 62.4 47 66.0
MBI16_g38085_MAGBIO Magnolia biondii HOM05D007765 ORTHO05D009826 8.1e-08 61.2 192 27.1
VMungo1215G1692 Vigna mungo HOM05D007765 ORTHO05D009826 1.2e-06 57.4 150 30.7
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.5e-06 57.0 149 28.2
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 3.4e-06 55.8 135 29.6
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 4.5e-06 55.5 155 27.7
CANSAT11G2643 Cannabis sativa HOM05D007765 ORTHO05D009826 4.5e-06 55.5 226 28.8
PSO170G3972 Papaver somniferum HOM05D007765 ORTHO05D009826 5.8e-06 55.1 228 25.9


User provided reference genes

Program Settings