Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 0.0e+00 3891.3 2010 100.0
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 0.0e+00 3516.5 2011 90.0
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 0.0e+00 3122.4 2010 80.4
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 0.0e+00 3031.9 2015 78.1
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 0.0e+00 2929.0 2015 76.8
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 0.0e+00 2923.3 2034 77.0
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 2634.8 2020 70.1
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 2575.4 2023 69.1
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 2575.4 2023 69.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 0.0e+00 2563.9 2026 69.2
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 0.0e+00 2560.4 2022 68.8
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 2553.1 2021 68.7
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 0.0e+00 2476.4 2019 66.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 2186.0 1977 59.8
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1591.6 2033 45.9
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1583.9 2095 44.2
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1534.6 2024 44.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1508.4 2090 43.0
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1488.0 2044 43.3
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1473.0 2105 42.3
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1465.7 2020 43.1
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1462.6 2020 43.2
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1454.5 2048 42.6
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1451.4 2021 43.0
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1448.0 2089 42.7
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1437.2 2044 42.3
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1429.1 2082 41.4
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1398.6 2078 41.1
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1394.8 2079 41.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1382.9 2182 39.7
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1362.8 2109 40.1
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1357.8 2044 40.6
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1348.6 2046 40.5
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1347.0 2093 40.3
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1343.6 2082 40.2
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1330.5 1970 41.0
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1325.5 2064 39.2
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1318.1 2009 40.4
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1306.6 2065 39.7
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1290.8 2079 38.9
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1285.8 2051 39.0
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1283.9 2102 38.2
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1282.3 2074 39.3
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1258.8 2048 38.8
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1255.4 1987 39.6
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1229.2 2019 38.8
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1222.2 2070 37.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1214.1 2066 37.6
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 0.0e+00 1213.4 2081 37.4
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1203.3 2072 36.9
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1183.7 2139 36.0
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1181.4 1957 38.3
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 0.0e+00 1175.2 2050 37.4
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1166.0 2018 37.8
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 0.0e+00 1163.7 1942 38.6
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 0.0e+00 1161.0 2059 36.5
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 0.0e+00 1151.0 1983 37.3
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 0.0e+00 1148.3 2041 36.9
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 0.0e+00 1145.2 1994 37.3
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 0.0e+00 1143.6 2058 37.7
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 0.0e+00 1142.9 2059 36.6
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 0.0e+00 1121.3 1992 36.3
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 0.0e+00 1118.2 2056 36.4
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 0.0e+00 1115.5 2095 36.5
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 0.0e+00 1112.8 2012 36.1
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 0.0e+00 1109.7 2067 36.2
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 0.0e+00 1098.2 2029 36.5
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 0.0e+00 1093.2 2042 36.0
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 0.0e+00 1086.6 2022 36.9
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 0.0e+00 1077.0 2063 35.7
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 6.9e-311 1071.6 1764 39.0
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 1.1e-306 1057.7 1990 35.2
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 7.0e-306 1055.0 1984 36.0
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 1.2e-300 1037.7 2029 35.4
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 2.8e-291 1006.5 1709 37.4
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 4.9e-291 1005.7 2075 35.2
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 2.3e-288 996.9 2063 34.5
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 9.5e-287 991.5 2044 34.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 2.8e-286 989.9 2003 35.0
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 1.0e-285 988.0 1523 39.9
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.8e-285 987.3 2076 34.1
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.6e-281 974.2 1999 34.7
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 8.6e-280 968.4 2018 33.5
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.3e-277 960.3 2046 33.9
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 5.2e-277 959.1 2126 33.6
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.2e-265 921.4 1963 33.9
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 2.8e-254 883.6 2004 32.2
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 7.3e-247 859.0 1418 38.7
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 4.5e-228 796.6 1655 34.6
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.6e-217 760.4 2038 29.7
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 1.5e-212 745.0 1630 33.0
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 6.1e-193 679.9 1468 33.9
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-188 665.6 1946 28.7
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 1.0e-163 582.8 1351 30.8
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 1.4e-157 562.4 1027 35.4
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 2.1e-153 548.5 761 43.8
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.6e-151 541.6 703 44.5
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 5.2e-144 517.3 520 52.7
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 4.3e-138 497.7 1001 33.7
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.2e-124 453.0 1304 28.4
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 2.4e-117 428.7 2214 23.1
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 6.0e-116 424.1 733 37.9
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 1.1e-114 419.9 2281 24.0
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 8.4e-110 403.7 2148 23.1
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 7.9e-92 344.0 666 34.8
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 2.4e-64 252.7 574 32.9
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 5.5e-61 241.5 645 31.2
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 2.8e-60 239.2 1889 22.3
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 2.3e-59 236.1 171 63.7
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 8.0e-52 211.1 399 34.1
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.4e-51 210.3 666 28.8
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 2.3e-51 209.5 388 34.5
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 2.0e-50 206.5 261 43.7
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 9.2e-48 197.6 339 38.6
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 8.6e-46 191.0 487 30.8
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 4.0e-43 182.2 758 25.7
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 3.7e-41 175.6 112 74.1
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 3.7e-41 175.6 116 70.7
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 4.6e-39 168.7 104 75.0
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 6.6e-38 164.9 219 41.6
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 1.2e-36 160.6 403 31.5
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 4.4e-34 152.1 100 72.0
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 1.3e-33 150.6 88 76.1
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 1.7e-33 150.2 93 74.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 2.2e-33 149.8 93 75.3
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 2.9e-33 149.4 332 35.2
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 1.2e-28 134.0 239 34.7
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 1.2e-26 127.5 205 36.1
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 1.5e-26 127.1 105 56.2
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 9.9e-26 124.4 122 59.0
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 2.4e-24 119.8 333 26.4
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 4.2e-24 119.0 150 45.3
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 5.4e-24 118.6 136 52.9
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 1.2e-23 117.5 90 61.1
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.0e-22 114.4 120 48.3
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 1.4e-19 104.0 270 30.7
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 2.0e-18 100.1 166 38.0
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 5.8e-18 98.6 261 31.0
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 1.3e-17 97.4 55 76.4
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-16 94.4 127 40.2
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 2.4e-16 93.2 51 80.4
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.7e-14 87.0 75 54.7
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 2.3e-14 86.7 123 44.7
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 5.6e-13 82.0 328 25.9
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-11 77.8 89 44.9
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 3.8e-09 69.3 79 45.6
RcHm_v2.0_Chr6g0244931 Rosa chinensis HOM05D004890 ORTHO05D005869 4.9e-09 68.9 73 49.3
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 2.7e-07 63.2 108 33.3


User provided reference genes

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