Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30074 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 3.7e-72 274.6 127 100.0
AL7G22130 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 5.6e-60 234.2 120 86.7
Carub.0005s0829 Capsella rubella HOM05D006945 ORTHO05D005549 2.5e-52 208.8 127 75.6
A08p19430 Brassica napus HOM05D006945 ORTHO05D005549 8.7e-45 183.7 129 68.2
BraA08t33905Z Brassica rapa HOM05D006945 ORTHO05D005549 8.7e-45 183.7 129 68.2
Sp7g27890 Schrenkiella parvula HOM05D006945 ORTHO05D005549 9.6e-44 180.3 127 67.7
BcaB03g12631 Brassica carinata HOM05D006945 ORTHO05D005549 1.3e-43 179.9 131 65.6
Carub.0007s1053 Capsella rubella HOM05D006945 ORTHO05D005549 8.4e-40 167.2 128 62.5
A03p59250 Brassica napus HOM05D006945 ORTHO05D005549 7.1e-39 164.1 128 60.9
BraA03t14982Z Brassica rapa HOM05D006945 ORTHO05D005549 7.1e-39 164.1 128 60.9
C06p15940 Brassica napus HOM05D006945 ORTHO05D005549 9.3e-39 163.7 128 60.2
BolC6t36786H Brassica oleracea HOM05D006945 ORTHO05D005549 9.3e-39 163.7 128 60.2
Thhalv10027387m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.2e-38 163.3 128 58.6
A03p60770 Brassica napus HOM05D006945 ORTHO05D005549 1.6e-38 162.9 128 61.7
BraA03t14999Z Brassica rapa HOM05D006945 ORTHO05D005549 1.6e-38 162.9 128 60.2
C07p57450 Brassica napus HOM05D006945 ORTHO05D005549 3.5e-38 161.8 128 60.2
BolC7t46213H Brassica oleracea HOM05D006945 ORTHO05D005549 3.5e-38 161.8 128 60.2
A03p59430 Brassica napus HOM05D006945 ORTHO05D005549 6.0e-38 161.0 128 60.2
C07p58660 Brassica napus HOM05D006945 ORTHO05D005549 7.9e-38 160.6 128 60.2
BolC7t46316H Brassica oleracea HOM05D006945 ORTHO05D005549 7.9e-38 160.6 128 60.2
Thhalv10026848m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 7.9e-38 160.6 127 65.4
Thhalv10026566m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 5.3e-34 147.9 129 55.0
BcaNung02932 Brassica carinata HOM05D006945 ORTHO05D005549 6.9e-34 147.5 126 54.8
BcaNung00515 Brassica carinata HOM05D006945 ORTHO05D005549 1.2e-33 146.7 109 61.5
AL7G22140 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 2.6e-33 145.6 129 52.7
AT4G30070 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 4.5e-33 144.8 130 52.3
Carub.0004s0716 Capsella rubella HOM05D006945 ORTHO05D005549 1.3e-32 143.3 132 50.8
A08p19440 Brassica napus HOM05D006945 ORTHO05D005549 8.4e-32 140.6 127 52.0
BraA08t33906Z Brassica rapa HOM05D006945 ORTHO05D005549 8.4e-32 140.6 127 52.0
CARHR237970 Cardamine hirsuta HOM05D006945 ORTHO05D005549 5.5e-31 137.9 129 47.3
Sp7g27870 Schrenkiella parvula HOM05D006945 ORTHO05D005549 9.3e-31 137.1 129 49.6
Carub.0007s1058 Capsella rubella HOM05D006945 ORTHO05D005549 3.5e-30 135.2 134 50.0
Carub.0007s1055 Capsella rubella HOM05D006945 ORTHO05D005549 7.9e-30 134.0 133 46.6
Sp7g27900 Schrenkiella parvula HOM05D006945 ORTHO05D005549 1.3e-29 133.3 111 57.7
BcaNung02066 Brassica carinata HOM05D006945 ORTHO05D005549 2.3e-29 132.5 130 48.5
BcaNung02068 Brassica carinata HOM05D006945 ORTHO05D005549 2.3e-29 132.5 130 48.5
C03p88930 Brassica napus HOM05D006945 ORTHO05D005549 1.1e-28 130.2 127 48.0
C07p62500 Brassica napus HOM05D006945 ORTHO05D005549 1.9e-28 129.4 135 47.4
BcaB03g12630 Brassica carinata HOM05D006945 ORTHO05D005549 4.3e-28 128.3 102 53.9
Thhalv10026783m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 3.7e-27 125.2 128 51.6
AL7G52460 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 6.2e-27 124.4 112 50.0
BolC7t46664H Brassica oleracea HOM05D006945 ORTHO05D005549 8.2e-27 124.0 136 46.3
A03p59420 Brassica napus HOM05D006945 ORTHO05D005549 4.0e-26 121.7 129 43.4
C07p57440 Brassica napus HOM05D006945 ORTHO05D005549 4.0e-26 121.7 131 43.5
BolC6t36787H Brassica oleracea HOM05D006945 ORTHO05D005549 4.0e-26 121.7 129 44.2
A03p59240 Brassica napus HOM05D006945 ORTHO05D005549 5.3e-26 121.3 129 42.6
BolC7t46212H Brassica oleracea HOM05D006945 ORTHO05D005549 2.0e-25 119.4 131 42.7
BraA03t14998Z Brassica rapa HOM05D006945 ORTHO05D005549 2.0e-25 119.4 129 42.6
BcaC08g44188 Brassica carinata HOM05D006945 ORTHO05D005549 2.6e-25 119.0 130 43.1
Sp5g15500 Schrenkiella parvula HOM05D006945 ORTHO05D005549 4.5e-25 118.2 132 43.2
CARHR237980 Cardamine hirsuta HOM05D006945 ORTHO05D005549 5.8e-25 117.9 127 49.6
AT5G38330 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 1.0e-24 117.1 129 43.4
BolC3t21204H Brassica oleracea HOM05D006945 ORTHO05D005549 1.0e-24 117.1 129 45.7
Glyma.15G164400 Glycine max HOM05D006945 ORTHO05D005549 2.9e-24 115.5 123 47.2
BcaNung00513 Brassica carinata HOM05D006945 ORTHO05D005549 4.9e-24 114.8 111 45.0
BcaNung00514 Brassica carinata HOM05D006945 ORTHO05D005549 4.9e-24 114.8 111 45.0
PGR044G0988 Punica granatum HOM05D006945 ORTHO05D005549 1.9e-23 112.8 133 44.4
Sp7g27850 Schrenkiella parvula HOM05D006945 ORTHO05D005549 2.5e-23 112.5 121 41.3
Eucgr.C02228 Eucalyptus grandis HOM05D006945 ORTHO05D005549 5.5e-23 111.3 104 50.0
Eucgr.C02231 Eucalyptus grandis HOM05D006945 ORTHO05D005549 5.5e-23 111.3 104 50.0
Eucgr.C02226 Eucalyptus grandis HOM05D006945 ORTHO05D005549 3.5e-22 108.6 104 50.0
C06p15950 Brassica napus HOM05D006945 ORTHO05D005549 6.0e-22 107.8 101 46.5
Thhalv10000699m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 1.8e-21 106.3 112 44.6
Carub.0008s0696 Capsella rubella HOM05D006945 ORTHO05D005549 2.3e-21 105.9 127 39.4
BcaC02g10382 Brassica carinata HOM05D006945 ORTHO05D005549 3.0e-21 105.5 135 38.5
Eucgr.C02232 Eucalyptus grandis HOM05D006945 ORTHO05D005549 3.0e-21 105.5 104 49.0
AT5G38317 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 8.7e-21 104.0 129 41.1
Lj6g0015237 Lotus japonicus HOM05D006945 ORTHO05D005549 8.7e-21 104.0 126 46.8
Carub.0004s0306 Capsella rubella HOM05D006945 ORTHO05D005549 1.9e-20 102.8 130 41.5
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 2.5e-20 102.4 117 40.2
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 2.5e-20 102.4 117 40.2
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 2.5e-20 102.4 117 40.2
AL8G19370 Arabidopsis lyrata HOM05D006945 ORTHO05D005549 4.3e-20 101.7 128 36.7
Rhsim13G0155500 Rhododendron simsii HOM05D006945 ORTHO05D005549 7.4e-20 100.9 136 41.2
Lj2g0024644 Lotus japonicus HOM05D006945 ORTHO05D005549 9.7e-20 100.5 122 42.6
BcaC02g10381 Brassica carinata HOM05D006945 ORTHO05D005549 4.8e-19 98.2 135 37.8
A03p65360 Brassica napus HOM05D006945 ORTHO05D005549 6.3e-19 97.8 110 44.5
FAN17G1318 Fragaria x ananassa HOM05D006945 ORTHO05D005549 1.4e-18 96.7 106 46.2
C04p29510 Brassica napus HOM05D006945 ORTHO05D005549 4.1e-18 95.1 113 38.9
BraA03t15590Z Brassica rapa HOM05D006945 ORTHO05D005549 5.3e-18 94.7 85 49.4
FvH4_4g06580 Fragaria vesca HOM05D006945 ORTHO05D005549 5.3e-18 94.7 106 45.3
BcaC02g10365 Brassica carinata HOM05D006945 ORTHO05D005549 6.9e-18 94.4 113 38.9
Eucgr.C02229 Eucalyptus grandis HOM05D006945 ORTHO05D005549 9.0e-18 94.0 105 45.7
AT5G42242 Arabidopsis thaliana HOM05D006945 ORTHO05D005549 2.0e-17 92.8 128 35.2
Rhsim13G0155400 Rhododendron simsii HOM05D006945 ORTHO05D005549 4.5e-17 91.7 133 38.3
BolC4t24502H Brassica oleracea HOM05D006945 ORTHO05D005549 3.2e-15 85.5 113 36.3
TPR.G7879 Trifolium pratense HOM05D018581 ORTHO05D005549 1.2e-14 83.6 110 41.8
Sp7g27880 Schrenkiella parvula HOM05D006945 ORTHO05D005549 2.1e-14 82.8 105 40.0
TPR.G30224 Trifolium pratense HOM05D006945 ORTHO05D005549 3.6e-14 82.0 107 41.1
CARHR214260 Cardamine hirsuta HOM05D006945 ORTHO05D005549 6.1e-14 81.3 99 43.4
Gohir.D08G029125 Gossypium hirsutum HOM05D009688 ORTHO05D005549 3.0e-13 79.0 132 38.6
Gohir.A08G018400 Gossypium hirsutum HOM05D009688 ORTHO05D005549 6.7e-13 77.8 123 39.0
Thhalv10010998m.g Eutrema salsugineum HOM05D006945 ORTHO05D005549 8.8e-13 77.4 127 40.9
Carub.0007s3775 Capsella rubella HOM05D006945 ORTHO05D005549 9.7e-12 73.9 124 32.3
BraA03t14997Z Brassica rapa HOM05D006945 ORTHO05D005549 1.3e-11 73.6 127 33.1
Gohir.A08G018300 Gossypium hirsutum HOM05D009688 ORTHO05D005549 2.2e-11 72.8 123 36.6
A03p59410 Brassica napus HOM05D006945 ORTHO05D005549 2.8e-11 72.4 127 32.3
C07p57430 Brassica napus HOM05D006945 ORTHO05D005549 8.2e-11 70.9 127 31.5
Medtr2g037190 Medicago truncatula HOM05D018581 ORTHO05D005549 8.2e-11 70.9 129 35.7
Eucgr.L01935 Eucalyptus grandis HOM05D006945 ORTHO05D005549 1.4e-10 70.1 69 46.4
Gorai.004G026300 Gossypium raimondii HOM05D009688 ORTHO05D005549 2.4e-10 69.3 103 37.9
Medtr2g037105 Medicago truncatula HOM05D018581 ORTHO05D005549 1.2e-09 67.0 126 35.7
TPR.G7878 Trifolium pratense HOM05D018581 ORTHO05D005549 1.2e-09 67.0 91 39.6
Medtr2g037665 Medicago truncatula HOM05D018581 ORTHO05D005549 2.0e-09 66.2 124 34.7
Psat0s3712g0120 Pisum sativum HOM05D009822 ORTHO05D011160 1.0e-08 63.9 125 32.8
Psat6g103440 Pisum sativum HOM05D009822 ORTHO05D011160 2.9e-08 62.4 136 32.4
CARHR237960 Cardamine hirsuta HOM05D006945 ORTHO05D005549 3.8e-08 62.0 50 50.0
FvH4_2g17531 Fragaria vesca HOM05D024112 ORTHO05D005549 8.5e-08 60.8 130 31.5
FAN24G3255 Fragaria x ananassa HOM05D024112 ORTHO05D005549 8.5e-08 60.8 130 31.5
FvH4_2g17511 Fragaria vesca HOM05D024112 ORTHO05D005549 1.4e-07 60.1 130 31.5
Gohir.D08G028900 Gossypium hirsutum HOM05D009688 ORTHO05D005549 1.4e-07 60.1 135 32.6
Medtr2g037085 Medicago truncatula HOM05D018581 ORTHO05D005549 2.5e-07 59.3 130 31.5
Gorai.004G026000 Gossypium raimondii HOM05D009688 ORTHO05D005549 7.2e-07 57.8 135 31.9
TPR.G36444 Trifolium pratense HOM05D013240 ORTHO05D011160 7.2e-07 57.8 120 35.0


User provided reference genes

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