Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 0.0e+00 1101.7 555 100.0
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.3e-306 1053.9 555 95.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.3e-297 1025.8 556 92.1
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.9e-296 1020.0 553 92.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.8e-295 1016.9 551 93.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.2e-292 1009.2 555 91.9
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.4e-272 941.8 549 86.2
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.4e-272 941.8 549 86.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.4e-272 941.8 549 86.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.0e-271 938.7 549 86.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.1e-269 932.9 549 86.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 5.9e-255 884.0 593 76.9
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 7.7e-231 803.9 488 80.1
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.8e-227 792.7 476 81.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.4e-224 782.3 477 81.1
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 5.9e-223 777.7 485 80.2
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.5e-215 751.9 456 80.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.6e-210 735.7 489 72.0
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.6e-210 735.7 480 73.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 7.5e-210 734.2 482 72.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 4.9e-209 731.5 494 70.2
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.4e-208 729.2 486 71.4
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 9.2e-208 727.2 483 71.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.0e-207 726.1 484 71.7
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.6e-207 724.9 485 72.2
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 4.6e-207 724.9 488 71.5
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 2.3e-206 722.6 493 69.8
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 3.0e-206 722.2 483 71.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 3.9e-206 721.8 487 71.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 3.9e-206 721.8 478 70.5
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.0e-206 721.5 489 70.1
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.9e-205 719.5 484 71.3
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.5e-205 719.2 484 70.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.5e-205 719.2 488 70.3
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 5.6e-205 718.0 485 70.7
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.3e-205 717.6 484 69.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 9.5e-205 717.2 467 73.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.6e-204 716.5 513 67.8
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.6e-204 716.5 498 69.7
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.8e-204 715.7 518 67.2
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.8e-204 715.7 513 67.6
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.1e-204 714.1 513 67.3
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.4e-203 713.4 487 71.3
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.4e-203 713.4 483 69.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.4e-203 713.4 483 70.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 5.2e-203 711.4 474 70.7
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-202 710.3 483 69.8
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.0e-202 709.5 485 69.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 9.9e-202 707.2 484 70.7
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 4.9e-201 704.9 483 70.2
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 4.9e-201 704.9 481 69.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.1e-200 703.7 501 67.7
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.4e-200 703.4 522 65.9
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.7e-199 699.1 482 68.3
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 2.7e-199 699.1 482 68.9
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 6.0e-199 698.0 503 67.4
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.3e-198 696.8 488 67.8
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.3e-198 696.8 486 69.5
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.7e-198 696.4 473 69.8
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 5.1e-198 694.9 492 67.1
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.1e-198 694.9 485 68.2
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.1e-197 693.7 488 67.8
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.9e-197 693.0 484 68.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.3e-197 692.2 480 67.9
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 4.3e-197 691.8 477 67.9
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 7.3e-197 691.0 481 68.4
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 9.5e-197 690.6 512 66.6
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.2e-196 690.3 470 71.9
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.1e-196 689.5 510 65.7
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 2.8e-196 689.1 478 67.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 3.6e-196 688.7 519 64.2
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 8.1e-196 687.6 482 67.4
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.4e-195 686.8 479 67.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.4e-195 686.8 474 67.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.4e-195 686.8 488 66.6
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.4e-195 686.0 484 68.4
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 3.1e-195 685.6 488 66.8
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.2e-195 684.9 478 68.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.2e-194 683.7 478 68.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.5e-194 683.3 480 66.9
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 7.1e-192 674.5 480 66.2
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 7.1e-192 674.5 477 67.5
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.6e-191 673.3 481 66.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.1e-191 672.9 453 70.4
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 7.8e-191 671.0 491 67.8
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.3e-190 669.5 476 67.0
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 3.3e-189 665.6 442 71.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 5.6e-189 664.8 478 66.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 4.7e-188 661.8 442 72.4
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 6.2e-188 661.4 509 64.2
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.0e-186 656.4 485 66.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 7.6e-186 654.4 503 63.4
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.8e-185 652.1 440 68.4
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 4.9e-185 651.7 497 64.4
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.4e-184 650.2 487 65.5
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.4e-184 649.4 441 68.7
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.1e-183 646.4 464 66.6
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.3e-182 642.9 478 63.6
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.4e-179 633.6 477 62.7
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 6.9e-179 631.3 442 68.1
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 6.9e-179 631.3 502 61.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.2e-177 626.3 488 62.9
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.2e-177 626.3 473 63.4
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.8e-174 616.7 481 64.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.0e-174 615.9 407 71.7
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 5.8e-170 601.7 481 63.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.2e-168 595.9 468 63.2
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.4e-165 584.7 385 71.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.7e-161 573.5 442 62.4
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 3.2e-160 569.3 398 67.6
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 7.6e-154 548.1 520 52.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.7e-153 547.0 489 58.9
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 3.1e-147 526.2 491 54.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 4.5e-146 522.3 502 53.0
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 7.7e-146 521.5 463 55.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 4.2e-136 489.2 347 68.6
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 5.5e-136 488.8 477 49.9
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 3.9e-134 482.6 320 73.4
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.4e-133 478.4 330 68.2
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.8e-132 475.7 339 65.8
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.9e-121 439.9 494 47.6
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.8e-117 424.9 295 70.5
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-116 424.5 295 69.8
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.4e-110 404.4 282 67.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 7.5e-109 398.7 380 55.3
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 3.3e-96 356.7 575 39.3
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.1e-94 350.1 249 65.5
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.2e-94 349.4 622 36.2
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.6e-82 311.2 464 41.8
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 5.6e-80 302.8 466 39.9
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.4e-60 236.1 155 66.5
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.1e-50 204.5 213 47.4
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.1e-47 194.5 240 47.1
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.8e-38 164.9 309 35.6
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.0e-33 149.1 108 71.3
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.0e-33 149.1 149 51.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.3e-31 142.1 118 59.3
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.7e-28 131.7 237 36.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 8.5e-28 129.4 87 65.5
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 3.9e-25 120.6 99 61.6
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.1e-22 110.9 73 71.2
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 8.5e-20 102.8 68 77.9
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.6e-18 98.6 77 63.6
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.8e-17 95.1 102 49.0


User provided reference genes

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