Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.1e-135 487.3 374 100.0
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.2e-120 436.4 374 93.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 6.4e-120 434.9 374 88.5
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.5e-116 422.9 374 90.1
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.5e-110 402.5 374 89.3
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 3.9e-93 345.9 374 73.8
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 5.1e-93 345.5 374 73.8
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.2e-83 312.0 374 74.1
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.1e-82 311.2 380 72.4
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.7e-80 303.9 385 70.9
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.1e-79 301.2 382 71.2
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.7e-78 296.6 374 69.8
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 6.0e-78 295.4 374 69.5
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-76 290.0 385 68.1
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-76 290.0 385 68.1
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 2.5e-76 290.0 385 68.1
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 2.5e-76 290.0 385 68.1
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.3e-75 287.7 376 73.7
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.6e-75 287.3 386 68.9
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.8e-75 286.6 384 69.3
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 3.2e-71 273.1 391 67.3
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 7.1e-71 271.9 324 74.1
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.6e-68 262.3 401 66.6
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.0e-66 256.1 376 61.7
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 3.0e-61 240.0 325 70.5
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 3.0e-61 240.0 324 71.3
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 7.4e-60 235.3 323 71.2
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 9.7e-60 235.0 324 61.1
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.7e-59 233.0 324 61.7
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 3.7e-59 233.0 325 70.5
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 6.3e-59 232.3 337 69.7
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.4e-58 230.3 323 71.5
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 3.1e-58 229.9 324 64.8
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.5e-57 227.6 324 68.8
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 7.7e-57 225.3 345 66.7
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.8e-56 223.0 331 69.8
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 6.5e-56 222.2 332 67.5
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 2.5e-55 220.3 324 62.3
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.5e-55 220.3 324 70.4
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 5.5e-55 219.2 324 64.2
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.6e-54 217.6 326 65.3
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.6e-54 217.6 326 65.3
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.6e-54 217.6 333 70.0
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.1e-54 217.2 329 62.3
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.1e-54 217.2 324 62.0
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.7e-54 216.9 327 67.6
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 6.1e-54 215.7 324 61.7
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.1e-54 215.7 324 61.4
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 6.1e-54 215.7 333 64.6
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 5.1e-53 212.6 326 74.5
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 9.7e-52 208.4 325 65.8
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 9.7e-52 208.4 328 66.8
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.3e-51 208.0 327 65.7
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.7e-51 207.6 338 50.6
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.2e-51 207.2 337 62.0
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 8.2e-51 205.3 329 68.7
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 8.2e-51 205.3 325 69.2
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.1e-50 204.9 325 69.5
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.4e-50 204.5 324 65.1
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.4e-50 204.5 324 61.7
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.4e-50 203.8 331 49.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 4.1e-50 203.0 327 58.7
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 6.9e-50 202.2 324 65.4
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.2e-49 201.4 324 69.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.9e-49 199.1 166 69.9
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 7.7e-49 198.7 324 59.3
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.0e-48 198.4 325 60.3
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 2.2e-48 197.2 324 63.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.8e-48 196.4 343 58.3
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 4.2e-47 193.0 326 60.7
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.6e-46 191.0 312 67.9
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 6.1e-46 189.1 312 60.6
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 1.0e-45 188.3 371 61.2
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.8e-45 187.6 334 61.7
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 2.3e-45 187.2 304 64.5
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.9e-45 186.4 319 66.1
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 5.1e-45 186.0 317 66.6
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 8.8e-45 185.3 276 69.9
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.1e-44 184.9 323 61.9
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.1e-44 184.9 344 62.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 2.0e-44 184.1 324 63.0
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 2.6e-44 183.7 332 56.9
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 2.6e-44 183.7 332 56.9
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.6e-44 183.7 362 61.6
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 3.3e-44 183.3 317 63.7
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 3.3e-44 183.3 367 60.2
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 4.4e-44 183.0 331 57.4
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 5.7e-44 182.6 335 60.0
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 5.7e-44 182.6 328 63.1
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 5.7e-44 182.6 328 67.7
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 5.7e-44 182.6 312 66.7
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.4e-44 182.2 325 60.3
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 6.3e-43 179.1 326 64.4
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 6.3e-43 179.1 321 63.2
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.8e-42 177.6 328 62.8
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.4e-42 177.2 317 50.2
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 4.1e-42 176.4 341 52.5
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.1e-42 176.4 306 64.7
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 7.0e-42 175.6 337 62.6
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.2e-41 174.9 336 64.0
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 4.5e-41 172.9 328 65.2
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 7.7e-41 172.2 361 64.0
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.0e-40 171.8 323 64.1
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.2e-40 170.6 336 63.4
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 2.2e-40 170.6 346 55.5
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.2e-40 170.6 347 62.0
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 3.8e-40 169.9 328 65.9
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.4e-39 167.9 323 63.5
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.5e-39 167.2 316 59.8
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.6e-38 164.5 306 65.4
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.1e-38 164.1 322 65.8
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.6e-38 163.3 325 61.5
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 6.1e-38 162.5 324 60.8
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 2.3e-37 160.6 323 53.9
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 3.9e-37 159.8 323 62.5
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.2e-37 159.5 324 48.5
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 5.2e-37 159.5 322 63.4
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.5e-36 157.9 307 70.7
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.6e-36 157.1 328 60.1
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.6e-36 157.1 320 60.0
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.3e-36 156.8 361 59.6
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 9.7e-36 155.2 164 56.1
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.3e-35 154.8 289 60.6
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.7e-35 154.5 354 53.7
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.7e-35 154.5 358 57.3
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 3.7e-35 153.3 321 57.3
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 3.7e-35 153.3 321 63.2
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 6.3e-35 152.5 326 59.5
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 6.3e-35 152.5 358 46.9
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 8.2e-35 152.1 322 64.9
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.1e-34 151.8 365 58.1
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-34 151.4 337 56.7
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.4e-34 151.4 327 59.3
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 4.1e-34 149.8 333 57.1
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 7.0e-34 149.1 327 53.2
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.2e-33 148.3 330 66.7
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.6e-33 147.9 321 59.5
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.6e-33 147.9 332 57.8
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.6e-33 147.1 381 36.7
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 4.5e-33 146.4 332 66.0
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 5.9e-33 146.0 322 67.1
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 5.9e-33 146.0 329 65.0
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.0e-32 145.2 321 62.6
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.0e-32 145.2 325 58.8
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 3.8e-32 143.3 320 65.3
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 5.0e-32 142.9 361 57.1
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 8.5e-32 142.1 332 58.1
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 8.5e-32 142.1 332 58.1
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.1e-31 141.7 332 58.4
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.1e-31 141.7 165 53.9
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.1e-31 141.7 264 69.7
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.2e-31 140.2 295 60.7
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 7.2e-31 139.0 318 61.9
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 2.1e-30 137.5 295 60.0
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.1e-30 137.5 307 60.3
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.4e-29 134.8 365 56.2
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.4e-29 134.8 320 60.3
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.4e-29 134.8 320 60.3
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.0e-29 133.3 337 62.6
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 5.2e-29 132.9 324 59.9
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.7e-28 129.4 324 38.6
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.7e-27 126.7 332 42.5
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 6.3e-27 125.9 369 55.6
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.2e-25 121.7 327 43.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.3e-24 118.2 325 56.6
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.3e-24 118.2 150 58.7
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.3e-24 118.2 150 58.7
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.5e-23 114.8 170 54.1
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 1.5e-23 114.8 150 58.0
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 7.2e-23 112.5 329 55.0
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 7.2e-23 112.5 329 55.0
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 7.2e-23 112.5 329 55.0
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 6.1e-22 109.4 287 46.3
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 8.0e-22 109.0 116 60.3
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.4e-21 108.2 252 64.3
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.3e-21 107.5 156 52.6
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.4e-18 98.2 311 31.5
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.8e-18 97.8 164 49.4
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.0e-17 94.4 236 65.3
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 2.3e-16 90.9 151 49.7
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.1e-15 88.6 331 56.2
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 2.5e-15 87.4 148 53.4
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.6e-14 83.6 81 54.3
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.0e-13 82.0 79 54.4
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 1.3e-11 75.1 93 44.1
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 3.7e-11 73.6 158 40.5
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 4.7e-06 56.6 81 55.6


User provided reference genes

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