Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29770 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.3e-185 652.9 330 100.0
AL7G22480 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.4e-126 456.1 278 80.6
Carub.0004s1486 Capsella rubella HOM05D008365 ORTHO05D011149 4.9e-116 421.8 277 73.3
CARHR215270 Cardamine hirsuta HOM05D008365 ORTHO05D011149 4.9e-108 395.2 276 69.6
AL6G29250 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.0e-100 370.9 268 67.9
AL6G29230 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.1e-96 357.5 275 64.4
AL7G22500 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 1.8e-89 333.6 280 60.4
Carub.0008s0192 Capsella rubella HOM05D008365 ORTHO05D011149 1.5e-85 320.5 266 61.3
AT4G29760 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 1.1e-83 314.3 279 56.3
AL7G22490 Arabidopsis lyrata HOM05D008365 ORTHO05D011149 2.1e-82 310.1 268 59.0
Sp7g27580 Schrenkiella parvula HOM05D008365 ORTHO05D011149 1.5e-77 293.9 266 56.8
CARHR251110 Cardamine hirsuta HOM05D008365 ORTHO05D011149 2.5e-75 286.6 257 61.9
BraA08t33873Z Brassica rapa HOM05D008365 ORTHO05D011149 1.3e-71 274.2 269 53.5
A08p19110 Brassica napus HOM05D008365 ORTHO05D011149 3.7e-71 272.7 269 53.2
BcaB03g12656 Brassica carinata HOM05D008365 ORTHO05D011149 6.3e-71 271.9 268 53.0
BcaC09g51862 Brassica carinata HOM05D008365 ORTHO05D011149 5.5e-67 258.8 264 50.8
Carub.0004s1487 Capsella rubella HOM05D008365 ORTHO05D011149 4.7e-66 255.8 265 49.8
BcaC01g01143 Brassica carinata HOM05D008365 ORTHO05D011149 8.0e-66 255.0 268 52.6
C03p88570 Brassica napus HOM05D008365 ORTHO05D011149 2.6e-64 250.0 250 52.0
Thhalv10027444m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 7.4e-64 248.4 269 50.9
BcaB03g12655 Brassica carinata HOM05D008365 ORTHO05D011149 1.3e-63 247.7 265 49.1
A08p19120 Brassica napus HOM05D008365 ORTHO05D011149 1.4e-62 244.2 267 49.1
Thhalv10026005m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 1.8e-62 243.8 263 47.9
BolC1t00807H Brassica oleracea HOM05D008365 ORTHO05D011149 1.3e-60 237.7 249 50.6
A07p02810 Brassica napus HOM05D008365 ORTHO05D011149 6.5e-60 235.3 265 46.8
BraA07t28079Z Brassica rapa HOM05D008365 ORTHO05D011149 6.5e-60 235.3 265 46.8
C03p88560 Brassica napus HOM05D008365 ORTHO05D011149 8.5e-60 235.0 292 45.5
A01p07560 Brassica napus HOM05D008365 ORTHO05D011149 1.0e-57 228.0 264 46.2
C01p08200 Brassica napus HOM05D008365 ORTHO05D011149 5.2e-57 225.7 249 49.0
BraA08t33874Z Brassica rapa HOM05D008365 ORTHO05D011149 3.4e-56 223.0 266 45.9
C03p88590 Brassica napus HOM05D008365 ORTHO05D011149 1.7e-52 210.7 266 43.6
A08p19130 Brassica napus HOM05D008365 ORTHO05D011149 2.9e-52 209.9 266 44.4
BraA01t00699Z Brassica rapa HOM05D008365 ORTHO05D011149 1.9e-51 207.2 249 46.2
Thhalv10011766m.g Eutrema salsugineum HOM05D008365 ORTHO05D011149 8.6e-44 181.8 261 41.8
CARHR237670 Cardamine hirsuta HOM05D008365 ORTHO05D011149 9.5e-43 178.3 263 41.4
BcaNung02965 Brassica carinata HOM05D008365 ORTHO05D011149 3.6e-42 176.4 174 52.3
AL1G54760 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 4.7e-42 176.0 253 40.3
CARHR163030 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.0e-41 174.9 255 41.6
Carub.0001s4052 Capsella rubella HOM05D008365 ORTHO05D014862 3.2e-38 163.3 260 40.0
AT1G48180 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 2.9e-36 156.8 255 36.9
AL1G59580 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 1.5e-35 154.5 253 39.9
CARHR063260 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.9e-35 154.1 252 38.1
AT5G18040 Arabidopsis thaliana HOM05D008365 ORTHO05D081110 5.6e-35 152.5 196 42.3
AT5G18065 Arabidopsis thaliana HOM05D008365 ORTHO05D011149 7.3e-35 152.1 122 63.9
Carub.0001s4053 Capsella rubella HOM05D008365 ORTHO05D014862 1.2e-34 151.4 256 37.1
AL1G61110 Arabidopsis lyrata HOM05D008365 ORTHO05D014862 2.1e-34 150.6 254 37.8
Carub.0001s4054 Capsella rubella HOM05D008365 ORTHO05D014862 3.6e-34 149.8 252 37.3
CARHR063700 Cardamine hirsuta HOM05D008365 ORTHO05D014862 1.4e-33 147.9 257 35.8
CARHR063690 Cardamine hirsuta HOM05D008365 ORTHO05D014862 2.3e-33 147.1 246 36.6
CARHR263650 Cardamine hirsuta HOM05D008365 ORTHO05D014862 9.8e-32 141.7 244 36.1
CARHR063300 Cardamine hirsuta HOM05D008365 ORTHO05D116364 4.4e-24 116.3 123 48.0
BolC3t21165H Brassica oleracea HOM05D008365 ORTHO05D011149 6.0e-21 105.9 132 43.9
BcaC09g52200 Brassica carinata HOM05D016251 ORTHO05D017520 5.2e-17 92.8 164 32.9
C01p09200 Brassica napus HOM05D016251 ORTHO05D017520 5.2e-17 92.8 164 32.9
A01p08230 Brassica napus HOM05D016251 ORTHO05D017520 6.8e-17 92.4 164 32.9
BraA01t00768Z Brassica rapa HOM05D016251 ORTHO05D017520 6.8e-17 92.4 164 32.9
AT1G51670 Arabidopsis thaliana HOM05D008365 ORTHO05D014862 1.2e-16 91.7 172 36.6
BcaNung01345 Brassica carinata HOM05D008615 ORTHO05D021443 9.9e-16 88.6 249 28.9
BcaC09g51771 Brassica carinata HOM05D016251 ORTHO05D017520 2.2e-15 87.4 249 28.5
CARHR063270 Cardamine hirsuta HOM05D008365 ORTHO05D116001 6.4e-15 85.9 84 52.4
CARHR237830 Cardamine hirsuta HOM05D008365 ORTHO05D017520 5.4e-14 82.8 196 32.1
Thhalv10000684m.g Eutrema salsugineum HOM05D008365 ORTHO05D017520 7.1e-14 82.4 245 27.8
Carub.0007s2333 Capsella rubella HOM05D000344 ORTHO05D003292 3.5e-13 80.1 259 25.9
AL7G36450 Arabidopsis lyrata HOM05D013859 ORTHO05D018433 1.7e-12 77.8 116 35.3
AL7G23550 Arabidopsis lyrata HOM05D008615 ORTHO05D021443 2.5e-11 73.9 257 27.2
C01p09880 Brassica napus HOM05D008615 ORTHO05D011779 6.2e-10 69.3 255 24.7
BolC1t00951H Brassica oleracea HOM05D008615 ORTHO05D011779 6.2e-10 69.3 255 24.7
BcaC09g52204 Brassica carinata HOM05D008615 ORTHO05D011779 1.1e-09 68.6 258 24.8
BraA01t00798Z Brassica rapa HOM05D008615 ORTHO05D011779 2.4e-09 67.4 255 24.3
A01p08200 Brassica napus HOM05D000574 ORTHO05D004834 4.0e-09 66.6 247 23.1
BraA01t00766Z Brassica rapa HOM05D000574 ORTHO05D004834 4.0e-09 66.6 247 23.1
Thhalv10026918m.g Eutrema salsugineum HOM05D008615 ORTHO05D011779 1.5e-08 64.7 249 22.9
C01p09160 Brassica napus HOM05D000574 ORTHO05D004834 1.7e-07 61.2 159 25.8
BolC1t00907H Brassica oleracea HOM05D000574 ORTHO05D004834 1.7e-07 61.2 159 25.8
BcaC09g51774 Brassica carinata HOM05D000574 ORTHO05D004834 3.8e-07 60.1 230 22.2
AL5G23100 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 6.4e-07 59.3 257 25.7
BcaC07g38550 Brassica carinata HOM05D017215 ORTHO05D031730 6.4e-07 59.3 123 31.7
C08p13470 Brassica napus HOM05D017215 ORTHO05D031730 8.4e-07 58.9 123 31.7
AL1G32050 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 1.9e-06 57.8 261 23.4
AL4G38000 Arabidopsis lyrata HOM05D008615 ORTHO05D011779 7.1e-06 55.8 263 27.8


User provided reference genes

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