Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 2.2e-285 984.9 494 100.0
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 6.0e-251 870.5 494 88.3
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 4.3e-241 837.8 495 85.1
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 3.1e-239 831.6 494 84.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 1.9e-220 769.2 509 77.2
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 1.9e-212 742.7 499 75.6
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 9.7e-209 730.3 502 74.3
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 2.2e-208 729.2 502 74.3
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 2.2e-208 729.2 502 74.3
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 2.6e-206 722.2 502 74.3
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 6.5e-205 717.6 503 73.8
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 2.8e-184 649.0 501 67.5
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.4e-143 513.8 501 53.1
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 2.8e-139 499.6 517 51.8
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 1.2e-137 494.2 508 52.6
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 7.6e-137 491.5 508 52.2
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 4.9e-136 488.8 511 53.6
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 1.1e-135 487.6 517 51.1
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 1.9e-135 486.9 500 50.4
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 4.1e-135 485.7 508 51.8
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 4.1e-135 485.7 503 52.7
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 4.6e-134 482.3 508 51.4
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 7.8e-134 481.5 512 52.3
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 5.1e-133 478.8 501 52.3
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 1.1e-132 477.6 508 51.2
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 2.5e-132 476.5 510 51.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 2.8e-131 473.0 506 50.8
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 2.8e-131 473.0 506 50.6
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 1.2e-129 467.6 502 50.4
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 1.5e-129 467.2 509 50.3
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 3.4e-129 466.1 498 50.4
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 1.3e-128 464.2 496 50.2
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 1.4e-127 460.7 503 49.7
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 1.4e-127 460.7 510 49.0
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 2.7e-126 456.4 510 50.2
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 4.6e-126 455.7 493 50.7
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.3e-125 454.1 508 49.0
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.5e-124 449.9 487 49.9
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.6e-124 448.7 487 49.9
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 8.1e-123 444.9 523 47.0
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.1e-122 443.0 504 49.6
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.5e-121 440.7 511 47.4
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 3.4e-121 439.5 515 47.8
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 7.6e-121 438.3 503 48.5
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 6.4e-120 435.3 505 48.5
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.9e-119 433.7 500 48.4
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 2.4e-119 433.3 480 48.8
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 4.2e-119 432.6 507 46.9
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 5.4e-119 432.2 509 47.9
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 3.5e-118 429.5 430 53.3
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 1.0e-117 427.9 423 52.5
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 6.7e-117 425.2 509 47.2
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 3.7e-115 419.5 502 48.2
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 9.9e-113 411.4 504 46.0
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 6.4e-112 408.7 515 45.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 1.2e-110 404.4 507 45.2
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 3.0e-109 399.8 427 50.8
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 3.9e-109 399.4 507 45.2
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 4.3e-108 396.0 419 50.4
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 4.8e-107 392.5 515 45.6
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.8e-106 390.6 451 46.1
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.2e-105 387.9 413 50.8
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.6e-105 385.2 415 50.1
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.6e-105 385.2 415 50.4
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 3.9e-101 372.9 509 45.0
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 1.6e-99 367.5 504 42.3
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 3.8e-88 329.7 417 45.1
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 6.5e-88 328.9 406 43.6
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 8.5e-88 328.6 509 40.3
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 1.0e-85 321.6 420 43.1
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.1e-82 309.7 297 54.9
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 7.0e-82 308.9 362 48.3
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 2.2e-75 287.3 470 37.7
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 1.7e-72 277.7 226 60.2
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 3.7e-67 260.0 557 33.8
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 2.1e-62 244.2 498 32.7
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 2.7e-62 243.8 564 31.9
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 1.2e-57 228.4 496 32.1
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 1.6e-33 148.3 477 26.2
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.1e-33 147.9 165 48.5
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 4.0e-29 133.7 127 55.9
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.5e-23 115.2 444 25.9
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 2.6e-12 77.8 515 23.3
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 1.3e-11 75.5 256 24.6


User provided reference genes

Program Settings