Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29300 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 4.7e-41 170.6 78 100.0
AT4G29305 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.2e-30 135.2 78 78.2
AL7G23140 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 4.8e-30 134.0 78 78.2
Carub.0007s1126 Capsella rubella HOM05D008236 ORTHO05D010394 1.1e-29 132.9 78 78.2
Thhalv10026870m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 9.1e-29 129.8 78 76.9
Thhalv10027145m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 7.7e-28 126.7 78 75.6
Carub.0007s1127 Capsella rubella HOM05D008236 ORTHO05D010394 2.2e-27 125.2 77 74.0
AT4G29290 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.9e-26 122.1 78 70.5
CARHR237050 Cardamine hirsuta HOM05D008236 ORTHO05D010394 2.5e-26 121.7 79 68.4
AL7G23150 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 5.5e-26 120.6 78 71.8
CARHR237060 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.8e-24 115.5 78 67.9
Thhalv10023924m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 1.5e-23 112.5 78 65.4
BcaC01g00492 Brassica carinata HOM05D008236 ORTHO05D010394 5.7e-23 110.5 78 65.4
C03p80630 Brassica napus HOM05D008236 ORTHO05D010394 5.7e-23 110.5 78 65.4
BolC3t20306H Brassica oleracea HOM05D008236 ORTHO05D010394 5.7e-23 110.5 78 65.4
BcaB03g12409 Brassica carinata HOM05D008236 ORTHO05D010394 8.3e-22 106.7 78 62.8
CARHR237090 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.2e-20 102.8 78 61.5
BolC3t20299H Brassica oleracea HOM05D008236 ORTHO05D010394 3.5e-20 101.3 79 58.2
Thhalv10027564m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 3.5e-20 101.3 78 55.1
BraA08t33848Z Brassica rapa HOM05D008236 ORTHO05D010394 1.0e-19 99.8 78 57.7
BraA08t34143Z Brassica rapa HOM05D008236 ORTHO05D010394 1.0e-19 99.8 79 60.8
A08p21900 Brassica napus HOM05D008236 ORTHO05D010394 2.3e-19 98.6 79 59.5
A08p21920 Brassica napus HOM05D008236 ORTHO05D010394 6.6e-19 97.1 79 55.7
BraA08t34144Z Brassica rapa HOM05D008236 ORTHO05D010394 6.6e-19 97.1 79 55.7
CARHR237080 Cardamine hirsuta HOM05D008236 ORTHO05D010394 6.6e-19 97.1 78 60.3
C03p80550 Brassica napus HOM05D008236 ORTHO05D010394 8.6e-19 96.7 79 55.7
BcaC01g01110 Brassica carinata HOM05D008236 ORTHO05D010394 1.1e-18 96.3 79 59.5
BolC3t21132H Brassica oleracea HOM05D008236 ORTHO05D010394 1.1e-18 96.3 79 59.5
C03p88220 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-18 95.9 79 59.5
A08p18850 Brassica napus HOM05D008236 ORTHO05D010394 4.2e-18 94.4 79 58.2
BraA08t33846Z Brassica rapa HOM05D008236 ORTHO05D010394 2.1e-17 92.0 79 57.0
BcaB03g12677 Brassica carinata HOM05D008236 ORTHO05D010394 1.0e-16 89.7 79 55.7
CARHR237070 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.0e-16 89.7 79 55.7
A08p18860 Brassica napus HOM05D008236 ORTHO05D010394 3.0e-16 88.2 80 57.5
BraA08t33847Z Brassica rapa HOM05D008236 ORTHO05D010394 3.0e-16 88.2 80 57.5
Aa31LG2G21150 Aethionema arabicum HOM05D008236 ORTHO05D010394 4.0e-16 87.8 83 55.4
A01p08760 Brassica napus HOM05D008236 ORTHO05D010394 8.9e-16 86.7 79 48.1
BraA01t00826Z Brassica rapa HOM05D008236 ORTHO05D010394 8.9e-16 86.7 79 48.1
BcaC05g26821 Brassica carinata HOM05D008236 ORTHO05D010394 1.5e-15 85.9 76 51.3
A09p37890 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-15 85.9 76 51.3
C05p26930 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-15 85.9 76 51.3
BraA09t39301Z Brassica rapa HOM05D008236 ORTHO05D010394 1.5e-15 85.9 76 51.3
C01p10280 Brassica napus HOM05D008236 ORTHO05D010394 2.6e-15 85.1 79 49.4
BolC3t21135H Brassica oleracea HOM05D008236 ORTHO05D010394 2.6e-15 85.1 80 55.0
C03p88270 Brassica napus HOM05D008236 ORTHO05D010394 3.4e-15 84.7 80 55.0
AT4G29273 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 8.3e-14 80.1 82 52.4
AL4G11440 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.1e-13 79.7 80 52.5
AL4G18670 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.4e-13 79.3 82 50.0
Carub.0007s1129 Capsella rubella HOM05D008236 ORTHO05D010394 2.4e-13 78.6 80 55.0
BolC1t00984H Brassica oleracea HOM05D008236 ORTHO05D010394 3.2e-13 78.2 79 44.3
AL6G42900 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 5.4e-13 77.4 79 51.9
AL7G23170 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.2e-12 76.3 75 52.0
AT4G29280 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.2e-12 76.3 80 51.2
AL6G42890 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.6e-12 75.9 79 53.2
C01p10300 Brassica napus HOM05D008236 ORTHO05D010394 3.5e-12 74.7 79 43.0
AT2G22121 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 5.9e-12 73.9 80 50.0
BcaNung00445 Brassica carinata HOM05D008236 ORTHO05D010394 7.8e-12 73.6 78 48.7
AT4G09153 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 3.9e-11 71.2 79 49.4
A01p08740 Brassica napus HOM05D008236 ORTHO05D010394 8.6e-11 70.1 79 39.2
BraA01t00824Z Brassica rapa HOM05D008236 ORTHO05D010394 8.6e-11 70.1 79 39.2
BraA03t14925Z Brassica rapa HOM05D008236 ORTHO05D010394 3.3e-10 68.2 61 49.2
Aa31LG2G21170 Aethionema arabicum HOM05D008236 ORTHO05D010394 4.3e-10 67.8 63 52.4
AT4G29283 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.2e-09 66.2 78 46.2
C07p39500 Brassica napus HOM05D010086 ORTHO05D010053 4.0e-08 61.2 80 40.0
BolC7t44469H Brassica oleracea HOM05D010086 ORTHO05D010053 4.0e-08 61.2 80 40.0
Thhalv10005578m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 4.0e-08 61.2 78 37.2
C07p56860 Brassica napus HOM05D009471 ORTHO05D011939 6.8e-08 60.5 81 40.7
Carub.0007s1128 Capsella rubella HOM05D009471 ORTHO05D011939 8.9e-08 60.1 81 38.3
Thhalv10005401m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 1.5e-07 59.3 78 35.9
BolC7t46164H Brassica oleracea HOM05D009471 ORTHO05D011939 2.0e-07 58.9 81 39.5
THA.LOC109116887 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 2.6e-07 58.5 78 37.2
THA.LOC109116902 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 2.6e-07 58.5 78 37.2
BcaB08g36157 Brassica carinata HOM05D009471 ORTHO05D011939 3.4e-07 58.2 81 39.5
BolC7t46162H Brassica oleracea HOM05D009471 ORTHO05D011939 3.4e-07 58.2 81 38.3
BraA09t41701Z Brassica rapa HOM05D009471 ORTHO05D011939 4.4e-07 57.8 81 38.3
A03p58880 Brassica napus HOM05D009471 ORTHO05D011939 5.8e-07 57.4 81 38.3
A09p63510 Brassica napus HOM05D009471 ORTHO05D011939 5.8e-07 57.4 81 38.3
BraA03t14948Z Brassica rapa HOM05D009471 ORTHO05D011939 5.8e-07 57.4 81 38.3
A03p58890 Brassica napus HOM05D009471 ORTHO05D011939 9.8e-07 56.6 81 38.3
BraA03t14949Z Brassica rapa HOM05D009471 ORTHO05D011939 9.8e-07 56.6 81 38.3
CARHR183110 Cardamine hirsuta HOM05D010086 ORTHO05D010053 9.8e-07 56.6 78 34.6
Carub.0008s0863 Capsella rubella HOM05D010086 ORTHO05D010053 1.3e-06 56.2 80 40.0
A09p04690 Brassica napus HOM05D010086 ORTHO05D010053 2.2e-06 55.5 80 37.5
BraA09t36106Z Brassica rapa HOM05D010086 ORTHO05D010053 2.2e-06 55.5 80 37.5
C09p05000 Brassica napus HOM05D010086 ORTHO05D010053 2.9e-06 55.1 80 37.5
BolC9t53429H Brassica oleracea HOM05D010086 ORTHO05D010053 2.9e-06 55.1 80 37.5
AL8G22100 Arabidopsis lyrata HOM05D010086 ORTHO05D010053 3.7e-06 54.7 78 30.8
CARHR182780 Cardamine hirsuta HOM05D010086 ORTHO05D010053 6.4e-06 53.9 78 33.3


User provided reference genes

Program Settings