Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29283 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 8.2e-44 179.9 83 100.0
AT4G29280 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 5.3e-27 124.0 77 74.0
AL7G23170 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.4e-22 109.4 73 69.9
AL6G42900 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.5e-21 105.9 77 64.9
AT4G09153 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 4.1e-19 97.8 77 59.7
AL6G42890 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 9.1e-19 96.7 77 62.3
AL4G11440 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 2.9e-17 91.7 78 59.0
AL4G18670 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 2.9e-17 91.7 80 57.5
Thhalv10027564m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 3.2e-16 88.2 78 55.1
AT2G22121 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.2e-15 86.3 78 57.7
AT4G29273 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.7e-15 85.1 77 53.2
A01p08760 Brassica napus HOM05D008236 ORTHO05D010394 8.0e-15 83.6 78 51.3
BraA01t00826Z Brassica rapa HOM05D008236 ORTHO05D010394 8.0e-15 83.6 78 51.3
C01p10280 Brassica napus HOM05D008236 ORTHO05D010394 2.3e-14 82.0 78 48.7
C01p10300 Brassica napus HOM05D008236 ORTHO05D010394 3.0e-14 81.6 78 51.3
BolC1t00984H Brassica oleracea HOM05D008236 ORTHO05D010394 4.0e-14 81.3 78 50.0
Carub.0007s1129 Capsella rubella HOM05D008236 ORTHO05D010394 2.6e-13 78.6 78 51.3
CARHR237090 Cardamine hirsuta HOM05D008236 ORTHO05D010394 5.7e-13 77.4 78 52.6
CARHR237050 Cardamine hirsuta HOM05D008236 ORTHO05D010394 7.5e-13 77.0 79 49.4
AT4G29305 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 3.7e-12 74.7 78 50.0
BcaC05g26821 Brassica carinata HOM05D008236 ORTHO05D010394 4.8e-12 74.3 76 46.1
A09p37890 Brassica napus HOM05D008236 ORTHO05D010394 4.8e-12 74.3 76 46.1
C05p26930 Brassica napus HOM05D008236 ORTHO05D010394 4.8e-12 74.3 76 46.1
BraA09t39301Z Brassica rapa HOM05D008236 ORTHO05D010394 4.8e-12 74.3 76 46.1
BolC3t20299H Brassica oleracea HOM05D008236 ORTHO05D010394 6.3e-12 73.9 79 44.3
A01p08740 Brassica napus HOM05D008236 ORTHO05D010394 8.3e-12 73.6 78 44.9
BraA01t00824Z Brassica rapa HOM05D008236 ORTHO05D010394 8.3e-12 73.6 78 44.9
C03p80550 Brassica napus HOM05D008236 ORTHO05D010394 1.1e-11 73.2 79 44.3
AL7G23150 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 2.4e-11 72.0 78 52.6
BcaC01g00492 Brassica carinata HOM05D008236 ORTHO05D010394 2.4e-11 72.0 78 48.7
C03p80630 Brassica napus HOM05D008236 ORTHO05D010394 2.4e-11 72.0 78 48.7
BolC3t20306H Brassica oleracea HOM05D008236 ORTHO05D010394 2.4e-11 72.0 78 48.7
Carub.0007s1126 Capsella rubella HOM05D008236 ORTHO05D010394 2.4e-11 72.0 78 50.0
BcaB03g12409 Brassica carinata HOM05D008236 ORTHO05D010394 3.1e-11 71.6 78 50.0
AL7G23140 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 9.1e-11 70.1 78 48.7
Thhalv10026870m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 9.1e-11 70.1 78 50.0
AT4G29290 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.2e-10 69.7 78 50.0
A08p21920 Brassica napus HOM05D008236 ORTHO05D010394 2.0e-10 68.9 79 41.8
C03p88270 Brassica napus HOM05D008236 ORTHO05D010394 2.0e-10 68.9 79 46.8
BraA08t34143Z Brassica rapa HOM05D008236 ORTHO05D010394 2.0e-10 68.9 79 43.0
BraA08t34144Z Brassica rapa HOM05D008236 ORTHO05D010394 2.0e-10 68.9 79 41.8
C07p39500 Brassica napus HOM05D010086 ORTHO05D010053 3.5e-10 68.2 78 39.7
BolC7t44469H Brassica oleracea HOM05D010086 ORTHO05D010053 3.5e-10 68.2 78 39.7
BcaB03g12677 Brassica carinata HOM05D008236 ORTHO05D010394 4.5e-10 67.8 79 46.8
A08p21900 Brassica napus HOM05D008236 ORTHO05D010394 4.5e-10 67.8 79 41.8
A08p18860 Brassica napus HOM05D008236 ORTHO05D010394 5.9e-10 67.4 79 46.8
BolC3t21135H Brassica oleracea HOM05D008236 ORTHO05D010394 5.9e-10 67.4 79 45.6
BraA08t33847Z Brassica rapa HOM05D008236 ORTHO05D010394 5.9e-10 67.4 79 46.8
AT4G29300 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.3e-09 66.2 78 46.2
C09p05000 Brassica napus HOM05D010086 ORTHO05D010053 1.7e-09 65.9 78 39.7
BolC9t53429H Brassica oleracea HOM05D010086 ORTHO05D010053 1.7e-09 65.9 78 39.7
Thhalv10027145m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 2.9e-09 65.1 78 48.7
BraA06t26798Z Brassica rapa HOM05D010086 ORTHO05D010053 3.8e-09 64.7 69 39.1
CARHR182780 Cardamine hirsuta HOM05D010086 ORTHO05D010053 3.8e-09 64.7 79 36.7
CARHR183110 Cardamine hirsuta HOM05D010086 ORTHO05D010053 3.8e-09 64.7 79 38.0
Thhalv10005578m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 3.8e-09 64.7 80 40.0
Aa31LG2G21150 Aethionema arabicum HOM05D008236 ORTHO05D010394 6.5e-09 63.9 82 45.1
Thhalv10023924m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 6.5e-09 63.9 78 46.2
BcaC06g30726 Brassica carinata HOM05D010086 ORTHO05D010053 8.5e-09 63.5 78 38.5
BraA08t33846Z Brassica rapa HOM05D008236 ORTHO05D010394 8.5e-09 63.5 79 45.6
CARHR237070 Cardamine hirsuta HOM05D008236 ORTHO05D010394 8.5e-09 63.5 78 41.0
Thhalv10005401m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 8.5e-09 63.5 78 39.7
C03p88220 Brassica napus HOM05D008236 ORTHO05D010394 1.1e-08 63.2 79 45.6
BraA08t33848Z Brassica rapa HOM05D008236 ORTHO05D010394 1.1e-08 63.2 78 42.3
THA.LOC109116902 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 1.1e-08 63.2 78 38.5
A06p38820 Brassica napus HOM05D010086 ORTHO05D010053 1.5e-08 62.8 69 39.1
A08p18850 Brassica napus HOM05D008236 ORTHO05D010394 1.5e-08 62.8 79 45.6
A09p04690 Brassica napus HOM05D010086 ORTHO05D010053 1.5e-08 62.8 78 38.5
BraA09t36106Z Brassica rapa HOM05D010086 ORTHO05D010053 1.5e-08 62.8 78 38.5
CARHR237080 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.5e-08 62.8 78 46.2
THA.LOC109116887 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 1.5e-08 62.8 78 38.5
AT5G48905 Arabidopsis thaliana HOM05D010086 ORTHO05D010053 2.5e-08 62.0 72 37.5
Carub.0007s1128 Capsella rubella HOM05D009471 ORTHO05D011939 3.2e-08 61.6 79 35.4
BcaC01g01110 Brassica carinata HOM05D008236 ORTHO05D010394 4.2e-08 61.2 79 44.3
BolC3t21132H Brassica oleracea HOM05D008236 ORTHO05D010394 4.2e-08 61.2 79 44.3
CARHR237060 Cardamine hirsuta HOM05D008236 ORTHO05D010394 4.2e-08 61.2 78 43.6
C07p56860 Brassica napus HOM05D009471 ORTHO05D011939 5.5e-08 60.8 79 36.7
Carub.0008s0863 Capsella rubella HOM05D010086 ORTHO05D010053 5.5e-08 60.8 78 38.5
AL8G22100 Arabidopsis lyrata HOM05D010086 ORTHO05D010053 7.2e-08 60.5 78 35.9
Carub.0007s1127 Capsella rubella HOM05D008236 ORTHO05D010394 7.2e-08 60.5 78 43.6
Gohir.D01G011300 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.2e-07 59.7 81 34.6
Gorai.002G013200 Gossypium raimondii HOM05D010058 ORTHO05D010053 1.2e-07 59.7 81 34.6
BolC7t46164H Brassica oleracea HOM05D009471 ORTHO05D011939 1.6e-07 59.3 79 35.4
BraA09t41701Z Brassica rapa HOM05D009471 ORTHO05D011939 1.6e-07 59.3 79 35.4
A09p63510 Brassica napus HOM05D009471 ORTHO05D011939 2.1e-07 58.9 79 35.4
Solyc10g074447.1 Solanum lycopersicum HOM05D010058 ORTHO05D010053 2.1e-07 58.9 81 34.6
BcaB08g36157 Brassica carinata HOM05D009471 ORTHO05D011939 2.7e-07 58.5 79 35.4
Solyc10g074465.1 Solanum lycopersicum HOM05D010058 ORTHO05D010053 2.7e-07 58.5 82 34.1
CAN.G960.14 Capsicum annuum HOM05D010058 ORTHO05D010053 1.0e-06 56.6 65 40.0
BolC7t46162H Brassica oleracea HOM05D009471 ORTHO05D011939 1.4e-06 56.2 79 34.2
Gohir.A01G013201 Gossypium hirsutum HOM05D010058 ORTHO05D010053 2.3e-06 55.5 81 33.3
Gohir.A01G012250 Gossypium hirsutum HOM05D010058 ORTHO05D010053 4.0e-06 54.7 81 34.6
Thecc.04G269000 Theobroma cacao HOM05D010058 ORTHO05D010053 6.8e-06 53.9 81 33.3
Psat6g067000 Pisum sativum HOM05D021823 ORTHO05D015167 8.8e-06 53.5 78 35.9


User provided reference genes

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