Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29280 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.4e-40 169.1 78 100.0
AL7G23170 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 5.7e-31 137.1 73 83.6
AT4G29283 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.9e-27 124.8 77 74.0
AL6G42900 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 5.7e-23 110.5 78 69.2
AL4G18670 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 3.1e-21 104.8 81 65.4
AL4G11440 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 4.1e-21 104.4 79 65.8
AL6G42890 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 2.7e-20 101.7 78 66.7
AT4G29273 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.3e-19 98.6 81 63.0
AT4G09153 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 6.6e-19 97.1 78 60.3
Thhalv10027564m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 6.6e-19 97.1 79 60.8
A01p08760 Brassica napus HOM05D008236 ORTHO05D010394 8.6e-19 96.7 79 57.0
BraA01t00826Z Brassica rapa HOM05D008236 ORTHO05D010394 8.6e-19 96.7 79 57.0
AT2G22121 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.1e-18 96.3 79 62.0
C01p10300 Brassica napus HOM05D008236 ORTHO05D010394 4.2e-18 94.4 79 55.7
C01p10280 Brassica napus HOM05D008236 ORTHO05D010394 3.6e-17 91.3 79 53.2
BolC1t00984H Brassica oleracea HOM05D008236 ORTHO05D010394 4.7e-17 90.9 79 53.2
CARHR237050 Cardamine hirsuta HOM05D008236 ORTHO05D010394 6.1e-17 90.5 80 55.0
Carub.0007s1129 Capsella rubella HOM05D008236 ORTHO05D010394 8.9e-16 86.7 79 59.5
A01p08740 Brassica napus HOM05D008236 ORTHO05D010394 3.4e-15 84.7 79 50.6
BraA01t00824Z Brassica rapa HOM05D008236 ORTHO05D010394 3.4e-15 84.7 79 50.6
BcaC05g26821 Brassica carinata HOM05D008236 ORTHO05D010394 5.7e-15 84.0 76 50.0
A09p37890 Brassica napus HOM05D008236 ORTHO05D010394 5.7e-15 84.0 76 50.0
C05p26930 Brassica napus HOM05D008236 ORTHO05D010394 5.7e-15 84.0 76 50.0
BraA09t39301Z Brassica rapa HOM05D008236 ORTHO05D010394 5.7e-15 84.0 76 50.0
Thhalv10026870m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 5.7e-15 84.0 80 56.2
CARHR237090 Cardamine hirsuta HOM05D008236 ORTHO05D010394 9.8e-15 83.2 80 56.2
AT4G29305 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.9e-14 81.6 79 53.2
AT4G29290 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 1.1e-13 79.7 80 55.0
AL7G23140 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.8e-13 79.0 80 53.8
Carub.0007s1126 Capsella rubella HOM05D008236 ORTHO05D010394 1.8e-13 79.0 79 53.2
BcaC01g00492 Brassica carinata HOM05D008236 ORTHO05D010394 5.4e-13 77.4 80 53.8
C03p80630 Brassica napus HOM05D008236 ORTHO05D010394 5.4e-13 77.4 80 53.8
BolC3t20306H Brassica oleracea HOM05D008236 ORTHO05D010394 5.4e-13 77.4 80 53.8
AT4G29300 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 7.0e-13 77.0 80 51.2
BolC3t20299H Brassica oleracea HOM05D008236 ORTHO05D010394 7.0e-13 77.0 80 47.5
BcaB03g12409 Brassica carinata HOM05D008236 ORTHO05D010394 1.2e-12 76.3 80 53.8
C03p80550 Brassica napus HOM05D008236 ORTHO05D010394 1.2e-12 76.3 80 47.5
Thhalv10027145m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 1.2e-12 76.3 80 55.0
A08p21920 Brassica napus HOM05D008236 ORTHO05D010394 2.0e-12 75.5 80 47.5
BraA08t34144Z Brassica rapa HOM05D008236 ORTHO05D010394 2.0e-12 75.5 80 47.5
BraA08t34143Z Brassica rapa HOM05D008236 ORTHO05D010394 5.9e-12 73.9 80 48.8
Thhalv10023924m.g Eutrema salsugineum HOM05D008236 ORTHO05D010394 7.8e-12 73.6 79 49.4
AL7G23150 Arabidopsis lyrata HOM05D008236 ORTHO05D010394 1.0e-11 73.2 79 51.9
A08p21900 Brassica napus HOM05D008236 ORTHO05D010394 1.3e-11 72.8 80 47.5
CARHR237060 Cardamine hirsuta HOM05D008236 ORTHO05D010394 2.9e-11 71.6 80 51.2
Carub.0007s1127 Capsella rubella HOM05D008236 ORTHO05D010394 1.1e-10 69.7 78 47.4
CARHR237070 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.9e-10 68.9 79 44.3
BcaB03g12677 Brassica carinata HOM05D008236 ORTHO05D010394 2.1e-09 65.5 80 47.5
BraA08t33848Z Brassica rapa HOM05D008236 ORTHO05D010394 2.1e-09 65.5 79 44.3
Aa31LG2G21150 Aethionema arabicum HOM05D008236 ORTHO05D010394 4.7e-09 64.3 84 46.4
BolC7t46164H Brassica oleracea HOM05D009471 ORTHO05D011939 8.0e-09 63.5 80 37.5
CARHR182780 Cardamine hirsuta HOM05D010086 ORTHO05D010053 1.4e-08 62.8 78 37.2
CARHR237080 Cardamine hirsuta HOM05D008236 ORTHO05D010394 1.4e-08 62.8 79 45.6
Gohir.D01G011300 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.4e-08 62.8 83 38.6
Gorai.002G013200 Gossypium raimondii HOM05D010058 ORTHO05D010053 1.4e-08 62.8 83 38.6
A09p63510 Brassica napus HOM05D009471 ORTHO05D011939 1.8e-08 62.4 80 36.2
C09p05000 Brassica napus HOM05D010086 ORTHO05D010053 1.8e-08 62.4 78 41.0
BolC9t53429H Brassica oleracea HOM05D010086 ORTHO05D010053 1.8e-08 62.4 78 41.0
BraA09t41701Z Brassica rapa HOM05D009471 ORTHO05D011939 1.8e-08 62.4 80 36.2
BcaC01g01110 Brassica carinata HOM05D008236 ORTHO05D010394 4.0e-08 61.2 81 45.7
C03p88220 Brassica napus HOM05D008236 ORTHO05D010394 4.0e-08 61.2 81 45.7
C07p56860 Brassica napus HOM05D009471 ORTHO05D011939 4.0e-08 61.2 80 36.2
BolC3t21132H Brassica oleracea HOM05D008236 ORTHO05D010394 4.0e-08 61.2 81 45.7
CARHR183110 Cardamine hirsuta HOM05D010086 ORTHO05D010053 4.0e-08 61.2 78 37.2
AT5G48905 Arabidopsis thaliana HOM05D010086 ORTHO05D010053 5.2e-08 60.8 72 36.1
BraA06t26798Z Brassica rapa HOM05D010086 ORTHO05D010053 5.2e-08 60.8 72 37.5
Thhalv10005401m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 5.2e-08 60.8 79 40.5
Gohir.A01G012250 Gossypium hirsutum HOM05D010058 ORTHO05D010053 5.2e-08 60.8 83 41.0
A08p18850 Brassica napus HOM05D008236 ORTHO05D010394 6.8e-08 60.5 80 45.0
AL8G22100 Arabidopsis lyrata HOM05D010086 ORTHO05D010053 8.9e-08 60.1 78 34.6
C03p88270 Brassica napus HOM05D008236 ORTHO05D010394 1.2e-07 59.7 81 43.2
Gohir.A01G013201 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.2e-07 59.7 83 38.6
A06p38820 Brassica napus HOM05D010086 ORTHO05D010053 1.5e-07 59.3 72 37.5
BraA08t33846Z Brassica rapa HOM05D008236 ORTHO05D010394 1.5e-07 59.3 80 43.8
Thhalv10005578m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 1.5e-07 59.3 78 38.5
Gohir.D01G011200 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.5e-07 59.3 83 37.3
C07p39500 Brassica napus HOM05D010086 ORTHO05D010053 2.0e-07 58.9 78 35.9
BolC7t44469H Brassica oleracea HOM05D010086 ORTHO05D010053 2.0e-07 58.9 78 35.9
BcaB08g36157 Brassica carinata HOM05D009471 ORTHO05D011939 2.6e-07 58.5 80 35.0
A09p04690 Brassica napus HOM05D010086 ORTHO05D010053 2.6e-07 58.5 78 37.2
BraA09t36106Z Brassica rapa HOM05D010086 ORTHO05D010053 2.6e-07 58.5 78 37.2
Potri.001G180750 Populus trichocarpa HOM05D009648 ORTHO05D012222 2.6e-07 58.5 79 38.0
A08p18860 Brassica napus HOM05D008236 ORTHO05D010394 3.4e-07 58.2 81 43.2
BraA08t33847Z Brassica rapa HOM05D008236 ORTHO05D010394 3.4e-07 58.2 81 43.2
BolC3t21135H Brassica oleracea HOM05D008236 ORTHO05D010394 5.8e-07 57.4 81 42.0
THA.LOC109116902 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 5.8e-07 57.4 78 34.6
BcaC06g30726 Brassica carinata HOM05D010086 ORTHO05D010053 7.5e-07 57.0 78 35.9
THA.LOC109116887 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 7.5e-07 57.0 78 34.6
Lj3g0014159 Lotus japonicus HOM05D011857 ORTHO05D010053 1.7e-06 55.8 77 40.3
Nn3g17741 Nelumbo nucifera HOM05D014595 ORTHO05D015167 1.7e-06 55.8 77 42.9
CARHR182790 Cardamine hirsuta HOM05D010086 ORTHO05D010053 2.2e-06 55.5 69 40.6
Nn8g40013 Nelumbo nucifera HOM05D014595 ORTHO05D015167 2.9e-06 55.1 79 43.0
BcaC06g30747 Brassica carinata HOM05D010086 ORTHO05D010053 3.7e-06 54.7 67 34.3
Gohir.A01G011300 Gossypium hirsutum HOM05D010058 ORTHO05D010053 3.7e-06 54.7 81 34.6
BolC7t46162H Brassica oleracea HOM05D009471 ORTHO05D011939 4.9e-06 54.3 80 33.8
Nn1g09088 Nelumbo nucifera HOM05D014595 ORTHO05D015167 8.3e-06 53.5 79 41.8


User provided reference genes

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