Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G29070 Arabidopsis thaliana HOM05D006850 ORTHO05D008545 1.6e-146 522.7 260 100.0
AL7G23370 Arabidopsis lyrata HOM05D006850 ORTHO05D008545 2.1e-138 495.7 260 90.0
CARHR236810 Cardamine hirsuta HOM05D006850 ORTHO05D008545 3.3e-131 471.9 261 89.3
Carub.0007s1152 Capsella rubella HOM05D006850 ORTHO05D008545 2.0e-128 462.6 274 85.8
Thhalv10026099m.g Eutrema salsugineum HOM05D006850 ORTHO05D008545 3.7e-127 458.4 260 83.8
Sp7g27010 Schrenkiella parvula HOM05D006850 ORTHO05D008545 1.1e-126 456.8 262 83.6
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 8.9e-121 437.2 261 81.2
BcaC09g51693 Brassica carinata HOM05D006850 ORTHO05D008545 3.2e-118 428.7 261 79.7
BolC1t01003H Brassica oleracea HOM05D006850 ORTHO05D008545 3.5e-117 425.2 261 78.5
Aa31LG2G21380 Aethionema arabicum HOM05D006850 ORTHO05D008545 3.3e-115 418.7 260 75.4
BcaC07g38376 Brassica carinata HOM05D006850 ORTHO05D008545 2.4e-110 402.5 253 75.5
C08p11310 Brassica napus HOM05D006850 ORTHO05D008545 2.4e-110 402.5 253 75.5
THA.LOC104826454 Tarenaya hassleriana HOM05D006850 ORTHO05D008545 1.0e-108 397.1 261 74.3
BolC8t48803H Brassica oleracea HOM05D006850 ORTHO05D008545 5.8e-104 381.3 253 74.3
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 3.1e-97 359.0 199 85.9
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 3.1e-97 359.0 199 85.9
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 3.8e-95 352.1 219 78.1
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 3.8e-95 352.1 219 78.1
QL01p017096 Quercus lobata HOM05D006850 ORTHO05D008545 6.7e-84 314.7 259 59.8
Cpa.g.sc157.64 Carica papaya HOM05D006850 ORTHO05D008545 2.5e-83 312.8 245 62.0
BcaB03g12596 Brassica carinata HOM05D006850 ORTHO05D008545 7.4e-83 311.2 253 64.0
Prupe.4G265500 Prunus persica HOM05D006850 ORTHO05D008545 2.6e-80 302.8 262 58.4
Haze_23232 Corylus avellana HOM05D006850 ORTHO05D008545 1.0e-79 300.8 202 68.3
Gorai.001G133600 Gossypium raimondii HOM05D006850 ORTHO05D008545 1.3e-79 300.4 263 57.4
Duzib150G1265 Durio zibethinus HOM05D006850 ORTHO05D008545 3.8e-79 298.9 260 57.7
Duzib170G0642 Durio zibethinus HOM05D006850 ORTHO05D008545 4.9e-79 298.5 258 56.2
Gohir.D07G123600 Gossypium hirsutum HOM05D006850 ORTHO05D008545 6.5e-79 298.1 263 57.0
Cfa009858 Carpinus fangiana HOM05D006850 ORTHO05D008545 1.4e-78 297.0 202 67.8
Potri.001G275300 Populus trichocarpa HOM05D006850 ORTHO05D008545 1.9e-78 296.6 204 67.6
Gohir.A07G119400 Gossypium hirsutum HOM05D006850 ORTHO05D008545 5.5e-78 295.0 263 57.0
CiPaw.14G112900 Carya illinoinensis HOM05D006850 ORTHO05D008545 1.2e-77 293.9 255 57.3
Psat0s3115g0040 Pisum sativum HOM05D006850 ORTHO05D008545 1.2e-77 293.9 206 66.5
CANSAT54G0445 Cannabis sativa HOM05D006850 ORTHO05D008545 1.6e-77 293.5 257 55.6
MD03G1165500 Malus domestica HOM05D006850 ORTHO05D008545 2.7e-77 292.7 262 56.1
TWI31G0452 Tripterygium wilfordii HOM05D006850 ORTHO05D008545 2.7e-77 292.7 202 66.8
Atru.chr3.2891 Acer truncatum HOM05D006850 ORTHO05D008545 1.8e-76 290.0 253 58.1
Ca_03895_v3 Cicer arietinum L. HOM05D006850 ORTHO05D008545 3.0e-76 289.3 262 56.5
Dinv36163 Davidia involucrata HOM05D006850 ORTHO05D008545 3.0e-76 289.3 266 55.6
Oeu030634.1 Olea europaea HOM05D006850 ORTHO05D008545 6.7e-76 288.1 261 53.6
Medtr0180s0050 Medicago truncatula HOM05D006850 ORTHO05D008545 8.7e-76 287.7 206 65.0
PGR102G2982 Punica granatum HOM05D006850 ORTHO05D008545 8.7e-76 287.7 262 56.1
Ciclev10016719m.g Citrus clementina HOM05D006850 ORTHO05D008545 1.1e-75 287.3 193 66.8
Ah.06g194580 Amaranthus hybridus HOM05D006850 ORTHO05D008545 2.5e-75 286.2 205 63.9
Actinidia06966 Actinidia chinensis HOM05D006850 ORTHO05D008545 3.3e-75 285.8 256 57.4
TPR.G16604 Trifolium pratense HOM05D006850 ORTHO05D008545 3.3e-75 285.8 197 66.5
Eucgr.B03735 Eucalyptus grandis HOM05D006850 ORTHO05D008545 5.7e-75 285.0 261 55.2
Rhsim13G0209200 Rhododendron simsii HOM05D006850 ORTHO05D008545 5.7e-75 285.0 259 55.2
Manes.02G139100 Manihot esculenta HOM05D006850 ORTHO05D008545 2.1e-74 283.1 257 55.6
AUR62000194 Chenopodium quinoa HOM05D006850 ORTHO05D008545 4.8e-74 282.0 203 64.5
ECA238G2187 Erigeron canadensis HOM05D006850 ORTHO05D008545 8.2e-74 281.2 204 64.2
Lalb_Chr21g0314461 Lupinus albus HOM05D006850 ORTHO05D008545 1.4e-73 280.4 242 57.9
Cc01_g05370 Coffea canephora HOM05D006850 ORTHO05D008545 1.8e-73 280.0 262 53.1
Sabra16G0169600 Salix brachista HOM05D006850 ORTHO05D008545 2.4e-73 279.6 226 59.7
vmacro04034 Vaccinium macrocarpon HOM05D006850 ORTHO05D008545 3.1e-73 279.3 256 54.7
Hma1.2p1_0262F.1_g105345 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 9.0e-73 277.7 263 55.1
Hma1.2p1_3601F.1_g336990 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 9.0e-73 277.7 263 55.1
HanXRQChr14g0427601 Helianthus annuus HOM05D006850 ORTHO05D008545 1.2e-72 277.3 206 63.6
GSVIVG01037285001 Vitis vinifera HOM05D006850 ORTHO05D008545 2.6e-72 276.2 256 53.1
arahy.Tifrunner.gnm1.ann1.5G2EZD Arachis hypogaea HOM05D006850 ORTHO05D008545 4.5e-72 275.4 263 56.7
CSS0022862 Camellia sinensis var. sinensis HOM05D006850 ORTHO05D008545 4.5e-72 275.4 254 56.7
Sc06g0004690 Simmondsia chinensis HOM05D006850 ORTHO05D008545 4.5e-72 275.4 199 62.3
arahy.Tifrunner.gnm1.ann1.TFQN26 Arachis hypogaea HOM05D006850 ORTHO05D008545 1.3e-71 273.9 264 56.8
EL10Ac4g10117 Beta vulgaris HOM05D006850 ORTHO05D008545 1.3e-71 273.9 200 61.5
AUR62006544 Chenopodium quinoa HOM05D006850 ORTHO05D008545 2.2e-71 273.1 189 66.7
DCAR_024408 Daucus carota HOM05D006850 ORTHO05D008545 3.8e-71 272.3 202 63.4
VMungo0540G1950 Vigna mungo HOM05D006850 ORTHO05D008545 3.8e-71 272.3 194 65.5
RcHm_v2.0_Chr5g0050481 Rosa chinensis HOM05D006850 ORTHO05D008545 5.0e-71 271.9 269 58.4
Glyma.20G041000 Glycine max HOM05D006850 ORTHO05D008545 6.5e-71 271.6 193 65.3
Glyma.07G232000 Glycine max HOM05D006850 ORTHO05D008545 8.5e-71 271.2 193 64.2
Manes.01G178500 Manihot esculenta HOM05D006850 ORTHO05D008545 8.5e-71 271.2 190 64.2
Lsat_1_v5_gn_2_3500 Lactuca sativa HOM05D006850 ORTHO05D008545 1.1e-70 270.8 232 56.9
ClCG02G022830 Citrullus lanatus HOM05D006850 ORTHO05D008545 2.5e-70 269.6 209 61.2
Lj6g0025243 Lotus japonicus HOM05D006850 ORTHO05D008545 2.5e-70 269.6 206 62.6
Peaxi162Scf00032g02418 Petunia axillaris HOM05D006850 ORTHO05D008545 3.2e-70 269.2 236 55.9
Hund07436 Selenicereus undatus HOM05D006850 ORTHO05D008545 3.2e-70 269.2 204 61.3
Phvul.006G014500 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 5.5e-70 268.5 194 64.4
MSTRG.18462 Avicennia marina HOM05D006850 ORTHO05D008545 7.2e-70 268.1 252 54.8
TAR633G0745 Trochodendron aralioides HOM05D006850 ORTHO05D008545 9.3e-70 267.7 239 54.4
Hund21980 Selenicereus undatus HOM05D006850 ORTHO05D008545 1.6e-69 266.9 205 60.5
CsaV3_6G038970 Cucumis sativus L. HOM05D006850 ORTHO05D008545 2.7e-69 266.2 210 60.5
Sopen01g004290 Solanum pennellii HOM05D006850 ORTHO05D008545 6.1e-69 265.0 239 55.6
PGSC0003DMG400022716 Solanum tuberosum HOM05D006850 ORTHO05D008545 1.3e-68 263.8 239 54.4
SalBow6G2930 Salvia bowleyana HOM05D006850 ORTHO05D008545 5.1e-68 261.9 253 51.4
Migut.D00666 Erythranthe guttata HOM05D006850 ORTHO05D008545 6.7e-68 261.5 248 53.6
unitig_0.g300 Utricularia gibba HOM05D006850 ORTHO05D008545 1.1e-67 260.8 241 54.4
MELO3C014560.2 Cucumis melo HOM05D006850 ORTHO05D008545 3.3e-67 259.2 210 59.5
Solyc01g008780.3 Solanum lycopersicum HOM05D006850 ORTHO05D008545 1.3e-66 257.3 186 64.5
Thecc.09G248000 Theobroma cacao HOM05D006850 ORTHO05D008545 1.7e-66 256.9 219 57.1
SGA_v2.0_scaffold29G12238 Striga asiatica HOM05D006850 ORTHO05D008545 4.8e-66 255.4 239 55.6
FAN16G3159 Fragaria x ananassa HOM05D006850 ORTHO05D008545 2.4e-65 253.1 176 68.2
FAN21G1525 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.1e-65 252.7 176 68.2
FAN25G3781 Fragaria x ananassa HOM05D006850 ORTHO05D008545 3.1e-65 252.7 176 68.2
FvH4_3g27811 Fragaria vesca HOM05D006850 ORTHO05D008545 5.3e-65 251.9 176 68.2
Sed0010964 Sechium edule HOM05D006850 ORTHO05D008545 5.3e-65 251.9 207 57.5
CAN.G64.14 Capsicum annuum HOM05D006850 ORTHO05D008545 1.2e-64 250.8 250 52.0
COL.COLO4_32765 Corchorus olitorius HOM05D006850 ORTHO05D008545 3.8e-63 245.7 228 56.1
Sed0015967 Sechium edule HOM05D006850 ORTHO05D008545 8.5e-63 244.6 213 56.3
Aqoxy1G00367 Aquilegia oxysepala HOM05D006850 ORTHO05D008545 5.5e-62 241.9 192 60.4
Nitab4.5_0003488g0060 Nicotiana tabacum HOM05D006850 ORTHO05D008545 5.5e-62 241.9 228 53.1
Nitab4.5_0000718g0310 Nicotiana tabacum HOM05D006850 ORTHO05D008545 1.6e-61 240.4 228 53.5
PSO339G1255 Papaver somniferum HOM05D006850 ORTHO05D008545 3.6e-61 239.2 195 58.5
PSO384G2311 Papaver somniferum HOM05D006850 ORTHO05D008545 1.0e-60 237.7 195 58.5
Phvul.009G232900 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 1.8e-60 236.9 215 54.9
MBI07_g26873_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 3.3e-59 232.6 242 48.8
MBI07_g21930_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 5.7e-59 231.9 186 56.5
Nn7g36731 Nelumbo nucifera HOM05D006850 ORTHO05D008545 5.7e-59 231.9 219 53.0
CDE09G0720 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 9.1e-57 224.6 136 72.8
HPP92_025151 Vanilla planifolia HOM05D006850 ORTHO05D008545 2.7e-53 213.0 145 64.1
ATR0745G042 Amborella trichopoda HOM05D006850 ORTHO05D008545 6.1e-53 211.8 176 58.0
CDE08G0294 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.4e-52 210.7 124 72.6
Lj1P279T21 Lonicera japonica HOM05D006850 ORTHO05D008545 3.0e-52 209.5 160 60.6
SEGI_38632 Sequoiadendron giganteum HOM05D006850 ORTHO05D008545 3.3e-51 206.1 191 51.8
SHI34292 Sapria himalayana HOM05D006850 ORTHO05D008545 6.5e-47 191.8 157 57.3
Mapoly0002s0074 Marchantia polymorpha HOM05D006850 ORTHO05D008545 2.5e-38 163.3 122 55.7
Pp3c9_17190 Physcomitrium patens HOM05D006850 ORTHO05D008545 2.8e-34 149.8 124 51.6
Pp3c15_13470 Physcomitrium patens HOM05D006850 ORTHO05D008545 6.3e-34 148.7 134 50.7
SMO145G0227 Selaginella moellendorffii HOM05D006850 ORTHO05D008545 1.6e-32 144.1 82 67.1
CBR_g29725 Chara braunii HOM05D006850 ORTHO05D008545 8.0e-29 131.7 102 52.9
HPP92_025149 Vanilla planifolia HOM05D006850 ORTHO05D008545 3.4e-27 126.3 96 57.3
Actinidia13010 Actinidia chinensis HOM05D006850 ORTHO05D008545 2.1e-13 80.5 178 34.3


User provided reference genes

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