Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.3e-196 688.7 348 100.0
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.9e-171 605.9 356 89.6
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 9.4e-150 533.9 362 80.1
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 3.1e-145 518.8 357 78.4
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 7.7e-136 487.6 359 77.7
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 2.5e-134 482.6 362 74.3
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 3.1e-121 439.1 356 71.1
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-114 416.0 361 66.8
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 2.4e-113 412.9 349 67.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 4.1e-113 412.1 357 65.8
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.7e-112 409.5 353 66.9
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 3.3e-110 402.5 353 68.3
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 3.3e-110 402.5 353 68.3
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 3.4e-107 392.5 377 63.9
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 5.9e-104 381.7 413 57.4
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.0e-96 356.7 303 67.0
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.5e-94 350.5 243 74.9
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 6.4e-90 335.1 373 55.2
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 7.1e-81 305.1 379 52.5
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 1.7e-74 283.9 493 43.0
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 2.1e-61 240.4 397 43.6
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 8.1e-61 238.4 404 45.8
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 6.9e-60 235.3 395 43.8
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 6.4e-58 228.8 408 42.2
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.1e-57 228.0 398 42.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.6e-56 224.2 432 39.4
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 4.6e-56 222.6 400 43.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 6.7e-55 218.8 393 44.8
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.9e-54 217.2 400 43.2
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 5.6e-54 215.7 395 41.5
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 9.6e-54 214.9 398 43.2
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.3e-53 214.5 344 45.3
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.1e-52 209.9 399 42.4
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 2.0e-51 207.2 376 44.4
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 2.0e-51 207.2 398 42.7
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.0e-51 207.2 389 41.4
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.6e-51 206.8 387 42.6
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 7.6e-51 205.3 374 42.0
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.3e-50 204.5 397 43.3
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.8e-50 203.0 404 39.6
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.8e-50 203.0 385 42.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.8e-50 203.0 385 42.1
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 2.7e-48 196.8 403 41.9
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.7e-48 196.8 390 41.5
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.0e-48 195.7 397 40.3
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 8.7e-47 191.8 400 40.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 3.3e-46 189.9 412 38.3
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 9.6e-46 188.3 394 41.4
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.6e-45 187.6 334 43.1
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.1e-45 187.2 411 39.9
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.8e-44 184.1 385 40.0
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.4e-44 183.7 398 40.5
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 9.0e-44 181.8 395 42.3
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.2e-43 181.4 442 38.7
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.5e-43 181.0 395 42.5
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 1.7e-42 177.6 400 40.0
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 3.8e-42 176.4 391 40.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 6.5e-42 175.6 391 40.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 8.5e-42 175.3 411 38.2
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 8.5e-42 175.3 421 39.0
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.1e-41 174.9 397 38.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 3.2e-41 173.3 415 39.0
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.2e-41 173.3 389 40.9
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 4.2e-41 172.9 332 41.9
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 5.5e-41 172.6 405 38.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 4.6e-40 169.5 346 41.6
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 6.1e-40 169.1 387 39.3
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.0e-39 168.3 397 37.5
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.1e-38 164.9 302 41.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 1.9e-38 164.1 329 41.6
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.7e-38 162.5 332 40.4
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 7.4e-38 162.2 333 39.3
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 7.4e-38 162.2 358 40.5
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 9.7e-38 161.8 449 38.1
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.6e-37 161.0 322 41.9
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.7e-37 159.8 372 38.4
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 6.3e-37 159.1 383 40.5
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 2.4e-36 157.1 455 36.5
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 4.1e-36 156.4 361 40.4
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 9.0e-36 155.2 322 41.3
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 9.0e-36 155.2 402 38.1
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 4.5e-35 152.9 337 40.9
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 5.9e-35 152.5 248 46.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 7.7e-35 152.1 327 41.0
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.0e-34 151.8 324 39.5
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.2e-34 150.6 335 39.7
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.0e-34 149.4 326 41.4
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 6.5e-34 149.1 337 35.3
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.1e-33 148.3 324 42.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.9e-33 147.5 397 36.8
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 9.4e-33 145.2 382 39.5
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 9.4e-33 145.2 336 37.8
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.2e-32 144.8 332 38.6
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.7e-32 143.7 381 37.3
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.9e-32 142.1 324 40.4
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 3.3e-30 136.7 400 38.2
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 9.7e-30 135.2 331 38.4
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 3.1e-28 130.2 329 38.0
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.2e-27 128.3 278 38.8
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.0e-27 127.5 187 47.1
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 3.4e-27 126.7 322 39.4
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.7e-26 124.4 428 32.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 8.5e-26 122.1 380 35.8
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 2.1e-24 117.5 374 35.0
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.3e-23 114.0 257 37.7
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 2.3e-23 114.0 352 33.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 3.0e-23 113.6 316 35.8
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.4e-22 109.0 262 38.5
A03p58570 Brassica napus HOM05D005514 ORTHO05D006563 2.8e-21 107.1 123 56.1
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.1e-20 105.1 325 34.5
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 5.3e-20 102.8 329 34.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 3.5e-19 100.1 325 33.5
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.9e-19 99.4 312 36.2
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 1.7e-18 97.8 219 37.0
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.2e-18 97.4 196 40.3
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.5e-17 92.8 258 36.0
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.2e-17 92.4 214 36.9
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 3.6e-16 90.1 266 35.3
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.0e-15 88.6 330 31.8
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.3e-15 87.4 275 35.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.5e-14 84.7 234 39.7
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.4e-14 83.2 240 36.2
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 2.8e-13 80.5 211 35.1
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.6e-11 74.7 109 45.9
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 2.0e-11 74.3 305 29.2
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.1e-09 68.6 276 31.5
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.4e-07 61.6 68 48.5
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 8.8e-07 58.9 67 55.2
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 4.4e-06 56.6 61 49.2


User provided reference genes

Program Settings