Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 8.5e-114 413.7 209 100.0
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.5e-110 402.9 209 97.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.5e-110 402.9 209 97.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 95.2
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 95.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 9.7e-110 400.2 209 95.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.3e-109 399.8 209 94.7
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-109 399.4 209 95.7
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.7e-109 399.4 209 95.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.7e-109 398.3 209 94.3
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 4.8e-109 397.9 208 95.7
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-108 396.7 209 95.2
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 3.1e-108 395.2 209 94.3
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 1.2e-107 393.3 209 93.3
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.0e-106 390.2 209 94.3
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 3.8e-106 388.3 209 92.3
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.5e-106 387.5 207 93.7
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 5.0e-98 361.3 205 86.3
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 9.1e-92 340.5 208 79.3
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.2e-91 340.1 207 77.8
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.6e-91 339.7 208 77.4
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 77.5
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 5.9e-91 337.8 208 77.9
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 2.2e-90 335.9 205 78.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 2.9e-90 335.5 209 77.0
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 5.0e-90 334.7 206 78.2
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.5e-90 334.3 209 82.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 6.5e-90 334.3 206 78.2
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.5e-89 333.2 207 75.8
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.5e-89 333.2 206 78.2
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.5e-89 333.2 206 77.7
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.5e-89 333.2 208 77.4
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.5e-89 332.4 205 78.5
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.5e-89 332.4 206 78.6
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 3.2e-89 332.0 208 75.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 4.2e-89 331.6 208 77.9
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 4.2e-89 331.6 205 76.6
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 5.5e-89 331.3 206 76.7
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 9.4e-89 330.5 205 78.0
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.2e-88 330.1 208 75.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.6e-88 329.7 205 76.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.6e-88 329.7 205 79.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 76.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 76.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 75.0
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.1e-88 329.3 205 77.6
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 2.1e-88 329.3 208 76.9
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.1e-88 329.3 208 74.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 2.1e-88 329.3 208 76.0
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 2.7e-88 328.9 208 76.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 3.6e-88 328.6 205 75.6
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 3.6e-88 328.6 208 76.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.6e-88 328.6 211 76.8
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 3.6e-88 328.6 209 75.1
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.6e-88 328.6 208 76.4
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 3.6e-88 328.6 205 76.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.7e-88 328.2 205 77.1
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.1e-88 327.8 208 76.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.4e-87 326.6 208 75.0
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.4e-87 326.6 207 75.4
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.8e-87 326.2 208 76.0
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.8e-87 326.2 207 75.8
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.8e-87 326.2 208 75.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.3e-87 325.9 207 76.3
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.3e-87 325.9 205 76.1
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.0e-87 325.5 207 75.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.0e-87 325.1 207 75.8
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.8e-87 324.3 208 73.1
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 6.8e-87 324.3 206 76.2
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.2e-86 323.6 205 74.6
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.0e-86 322.8 206 76.2
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.6e-86 322.4 213 73.2
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 7.5e-86 320.9 206 75.7
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.3e-85 320.1 206 75.2
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.3e-85 320.1 206 75.2
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.3e-85 320.1 206 75.2
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.2e-85 319.3 227 70.0
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.8e-85 318.9 207 74.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 6.3e-85 317.8 205 74.6
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.4e-84 316.6 205 75.1
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 9.1e-84 313.9 205 72.2
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.6e-83 313.2 205 73.7
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 2.0e-83 312.8 205 73.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.7e-83 312.4 215 70.7
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 7.7e-83 310.8 205 75.1
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.5e-81 306.6 203 72.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.5e-81 306.6 210 71.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.6e-80 303.1 209 70.8
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.6e-80 302.0 186 76.3
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 6.1e-80 301.2 203 72.4
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 3.0e-79 298.9 208 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 4.9e-77 291.6 203 69.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.8e-76 289.7 205 66.8
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.2e-75 287.0 178 78.1
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.5e-75 285.4 213 64.8
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 4.5e-75 285.0 207 67.6
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.9e-74 282.0 208 68.8
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.9e-74 282.0 208 68.8
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.9e-74 282.0 203 66.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.5e-73 279.3 203 66.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.5e-70 267.7 170 75.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.5e-65 252.7 166 71.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 3.3e-65 252.3 170 70.6
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.6e-64 248.8 189 66.1
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.5e-62 243.4 159 74.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.5e-62 243.4 157 75.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.5e-62 241.1 157 75.8
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 8.3e-61 237.7 251 51.0
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.8e-56 222.6 212 54.7
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 4.0e-55 218.8 191 58.6
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 5.2e-55 218.4 135 77.8
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 6.6e-50 201.4 208 50.5
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.8e-48 196.1 182 54.4
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.1e-47 192.6 152 65.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.1e-44 184.1 123 74.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.1e-44 184.1 123 74.0
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 5.4e-44 181.8 210 48.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 7.3e-41 171.4 142 64.1
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-36 157.5 223 40.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-36 157.5 223 40.8
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.0e-34 149.4 95 74.7
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.0e-26 124.4 89 71.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 5.1e-26 122.1 196 36.7
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.5e-19 99.4 65 67.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 7.9e-19 98.2 104 50.0
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.4e-15 87.4 53 79.2
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.8e-15 87.0 77 58.4
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.1e-15 86.3 52 75.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 3.1e-15 86.3 51 76.5
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 8.4e-13 78.2 65 61.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.3e-10 70.9 57 63.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.1e-10 68.9 57 57.9
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 8.7e-10 68.2 39 84.6
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.3e-09 66.2 47 68.1
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.3e-07 58.9 134 35.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-06 57.0 38 78.9


User provided reference genes

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