Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 4.2e-101 371.3 181 100.0
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 1.5e-71 273.1 142 90.8
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 5.0e-62 241.5 144 83.3
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 9.1e-56 220.7 144 75.0
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 1.8e-51 206.5 138 74.6
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 6.8e-51 204.5 143 72.7
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 1.5e-50 203.4 143 70.6
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 1.7e-49 199.9 140 70.7
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 2.8e-49 199.1 140 72.1
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 4.1e-48 195.3 127 73.2
CARHR236140 Cardamine hirsuta HOM05D007676 ORTHO05D009456 1.7e-46 189.9 141 66.0
Carub.0007s1234 Capsella rubella HOM05D007676 ORTHO05D009456 6.1e-44 181.4 142 65.5
BcaC06g32625 Brassica carinata HOM05D007676 ORTHO05D009456 6.3e-41 171.4 143 63.6
THA.LOC104804054 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 3.2e-32 142.5 127 54.3
Aa31LG2G22250 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.0e-30 137.5 101 65.3
Aa31LG7G7230 Aethionema arabicum HOM05D007676 ORTHO05D009456 9.5e-29 131.0 139 49.6
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.7e-22 110.2 122 45.9
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 1.1e-16 90.9 126 38.9
SalBow7G3232 Salvia bowleyana HOM05D007676 ORTHO05D009456 4.6e-15 85.5 124 36.3
SalBow7G3503 Salvia bowleyana HOM05D007676 ORTHO05D009456 4.6e-15 85.5 124 36.3
Atru.chr6.2889 Acer truncatum HOM05D007676 ORTHO05D009456 3.0e-14 82.8 128 35.2
Atru.chr6.2952 Acer truncatum HOM05D007676 ORTHO05D009456 3.0e-14 82.8 128 35.2
Ciclev10017923m.g Citrus clementina HOM05D007676 ORTHO05D009456 3.9e-14 82.4 99 38.4
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.1e-13 80.9 120 34.2
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 1.1e-13 80.9 120 31.7
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 1.5e-13 80.5 119 34.5
FvH4_4g18380 Fragaria vesca HOM05D007676 ORTHO05D009456 1.9e-13 80.1 120 34.2
Migut.M00162 Erythranthe guttata HOM05D007676 ORTHO05D009456 2.5e-13 79.7 128 39.8
Peaxi162Scf00059g00109 Petunia axillaris HOM05D007676 ORTHO05D009456 3.3e-13 79.3 123 32.5
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 1.2e-12 77.4 125 32.8
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 1.6e-12 77.0 121 34.7
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 4.7e-12 75.5 135 34.1
Phvul.005G103800 Phaseolus vulgaris HOM05D007676 ORTHO05D009456 4.7e-12 75.5 105 41.0
CAN.G209.28 Capsicum annuum HOM05D007676 ORTHO05D009456 6.2e-12 75.1 122 35.2
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 8.1e-12 74.7 124 33.1
MD17G1235700 Malus domestica HOM05D007676 ORTHO05D009456 8.1e-12 74.7 122 28.7
Prupe.2G079300 Prunus persica HOM05D007676 ORTHO05D009456 1.4e-11 73.9 120 33.3
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 4.0e-11 72.4 123 32.5
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 5.2e-11 72.0 123 30.9
FAN05G5516 Fragaria x ananassa HOM05D007676 ORTHO05D009456 6.8e-11 71.6 131 31.3
A01p19810 Brassica napus HOM05D015040 ORTHO05D016588 8.9e-11 71.2 92 41.3
VMungo1080G1717 Vigna mungo HOM05D007676 ORTHO05D009456 8.9e-11 71.2 106 34.9
BcaC09g50481 Brassica carinata HOM05D015040 ORTHO05D016588 1.5e-10 70.5 81 43.2
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 1.5e-10 70.5 121 28.9
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 2.0e-10 70.1 125 32.0
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 2.6e-10 69.7 131 30.5
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 2.6e-10 69.7 123 30.1
Prupe.3G134200 Prunus persica HOM05D007676 ORTHO05D009456 2.6e-10 69.7 120 32.5
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 3.4e-10 69.3 107 32.7
C01p24900 Brassica napus HOM05D015040 ORTHO05D016588 5.8e-10 68.6 83 42.2
BolC1t02435H Brassica oleracea HOM05D015040 ORTHO05D016588 5.8e-10 68.6 83 42.2
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 7.6e-10 68.2 100 36.0
THA.LOC104801166 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 1.3e-09 67.4 118 29.7
AT5G44265 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 2.2e-09 66.6 133 30.1
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 2.2e-09 66.6 107 31.8
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 2.2e-09 66.6 107 31.8
MBI02_g15133_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 2.2e-09 66.6 118 31.4
MD06G1108000 Malus domestica HOM05D007676 ORTHO05D009456 2.9e-09 66.2 120 32.5
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 3.8e-09 65.9 123 35.0
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 3.8e-09 65.9 131 32.1
TPR.G6389 Trifolium pratense HOM05D007676 ORTHO05D009456 3.8e-09 65.9 107 35.5
MD06G1108100 Malus domestica HOM05D007676 ORTHO05D009456 4.9e-09 65.5 93 34.4
Carub.0008s0425 Capsella rubella HOM05D007676 ORTHO05D009456 6.4e-09 65.1 134 29.1
FAN23G2239 Fragaria x ananassa HOM05D007676 ORTHO05D009456 8.4e-09 64.7 87 39.1
Sabra02G0009600 Salix brachista HOM05D007676 ORTHO05D009456 8.4e-09 64.7 128 29.7
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 8.4e-09 64.7 101 34.7
CARHR178940 Cardamine hirsuta HOM05D007676 ORTHO05D009456 1.1e-08 64.3 127 29.9
Glyma.12G204200 Glycine max HOM05D007676 ORTHO05D009456 1.1e-08 64.3 132 30.3
Sp2g09080 Schrenkiella parvula HOM05D007676 ORTHO05D009456 1.1e-08 64.3 98 34.7
Aa31LG5G2990 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.9e-08 63.5 134 29.9
AL8G15740 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 1.9e-08 63.5 133 29.3
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 1.9e-08 63.5 109 34.9
Os06g0539500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 1.9e-08 63.5 129 27.1
Thhalv10003292m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 2.4e-08 63.2 98 33.7
Lalb_Chr14g0367061 Lupinus albus HOM05D007676 ORTHO05D009456 2.4e-08 63.2 117 27.4
SGA_v2.0_scaffold70G23506 Striga asiatica HOM05D000223 ORTHO05D000736 2.4e-08 63.2 95 35.8
Peaxi162Scf00050g00313 Petunia axillaris HOM05D007676 ORTHO05D009456 3.2e-08 62.8 132 31.8
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 3.2e-08 62.8 129 27.1
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 4.2e-08 62.4 121 33.1
Migut.N01742 Erythranthe guttata HOM05D000275 ORTHO05D000181 5.4e-08 62.0 127 29.1
Migut.N01746 Erythranthe guttata HOM05D000275 ORTHO05D000181 5.4e-08 62.0 127 29.1
Migut.N01747 Erythranthe guttata HOM05D000275 ORTHO05D000181 5.4e-08 62.0 127 29.1
Migut.N01748 Erythranthe guttata HOM05D000275 ORTHO05D000181 5.4e-08 62.0 127 29.1
Lalb_Chr14g0366911 Lupinus albus HOM05D007676 ORTHO05D009456 1.2e-07 60.8 101 35.6
Psat0s13238g0040 Pisum sativum HOM05D000275 ORTHO05D003378 1.2e-07 60.8 133 30.1
BcaC03g16646 Brassica carinata HOM05D007676 ORTHO05D009456 1.6e-07 60.5 98 32.7
A02p28290 Brassica napus HOM05D007676 ORTHO05D009456 1.6e-07 60.5 98 32.7
C02p44830 Brassica napus HOM05D007676 ORTHO05D009456 1.6e-07 60.5 98 32.7
BolC2t10523H Brassica oleracea HOM05D007676 ORTHO05D009456 1.6e-07 60.5 98 32.7
BraA02t07864Z Brassica rapa HOM05D007676 ORTHO05D009456 1.6e-07 60.5 98 32.7
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 1.6e-07 60.5 124 29.0
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 1.6e-07 60.5 123 27.6
VMungo0647G1858 Vigna mungo HOM05D011707 ORTHO05D000181 1.6e-07 60.5 121 30.6
BraA01t01912Z Brassica rapa HOM05D000223 ORTHO05D023898 2.1e-07 60.1 68 47.1
PGR042G0101 Punica granatum HOM05D007676 ORTHO05D009456 2.1e-07 60.1 122 31.1
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 2.7e-07 59.7 139 27.3
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.7e-07 59.7 105 32.4
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.7e-07 59.7 105 32.4
Lalb_Chr14g0366961 Lupinus albus HOM05D007676 ORTHO05D009456 2.7e-07 59.7 101 33.7
Sp7g26365 Schrenkiella parvula HOM05D015040 ORTHO05D016588 3.5e-07 59.3 88 38.6
PSO063G4293 Papaver somniferum HOM05D000275 ORTHO05D000181 4.6e-07 58.9 98 30.6
Potri.002G012300 Populus trichocarpa HOM05D007676 ORTHO05D009456 4.6e-07 58.9 123 27.6
Migut.N01745 Erythranthe guttata HOM05D000275 ORTHO05D000181 6.0e-07 58.5 122 27.0
Potri.017G013200 Populus trichocarpa HOM05D007676 ORTHO05D009456 7.8e-07 58.2 98 32.7
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 1.0e-06 57.8 126 29.4
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.0e-06 57.8 126 29.4
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.0e-06 57.8 126 29.4
unitig_22.g6600 Utricularia gibba HOM05D000275 ORTHO05D000181 1.0e-06 57.8 123 33.3
AL7G24180 Arabidopsis lyrata HOM05D015040 ORTHO05D016588 1.3e-06 57.4 68 42.6
Lalb_Chr00c25g0407471 Lupinus albus HOM05D007676 ORTHO05D009456 1.3e-06 57.4 101 31.7
Migut.N01740 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.7e-06 57.0 127 28.3
Manes.13G143800 Manihot esculenta HOM05D007676 ORTHO05D009456 1.7e-06 57.0 100 32.0
Sed0020486 Sechium edule HOM05D000275 ORTHO05D000181 1.7e-06 57.0 127 29.1
Aqoxy4G00390 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 2.3e-06 56.6 123 29.3
Hund19776 Selenicereus undatus HOM05D000275 ORTHO05D000181 2.3e-06 56.6 121 31.4
Oeu024945.1 Olea europaea HOM05D000275 ORTHO05D000181 3.0e-06 56.2 129 27.1
PSO063G5480 Papaver somniferum HOM05D000275 ORTHO05D000181 3.0e-06 56.2 126 27.8
AT4G28397 Arabidopsis thaliana HOM05D015040 ORTHO05D016588 5.1e-06 55.5 68 39.7
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 5.1e-06 55.5 124 29.8
PSO832G2396 Papaver somniferum HOM05D000275 ORTHO05D000181 5.1e-06 55.5 126 27.0
ATR1098G069 Amborella trichopoda HOM05D000275 ORTHO05D000181 6.6e-06 55.1 121 28.1
Aqoxy4G02395 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 6.6e-06 55.1 128 28.1
Lj3g0021089 Lotus japonicus HOM05D007676 ORTHO05D009456 8.7e-06 54.7 102 33.3
TPR.G30493 Trifolium pratense HOM05D000275 ORTHO05D000181 8.7e-06 54.7 126 28.6


User provided reference genes

Program Settings