Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 6.3e-106 387.5 203 100.0
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 9.2e-81 303.9 208 78.8
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.6e-78 294.7 209 78.9
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.1e-76 290.4 208 75.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.1e-76 288.9 211 75.8
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-75 285.4 209 76.6
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.4e-73 280.0 211 73.9
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-72 276.6 211 73.9
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.6e-72 276.6 211 73.9
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.7e-71 273.1 208 72.6
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 6.6e-71 271.2 211 73.0
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-70 270.0 210 71.9
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.4e-68 263.5 201 71.1
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-65 252.7 201 70.1
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 4.6e-64 248.4 203 66.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.7e-63 246.5 205 65.9
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.6e-61 238.8 203 67.0
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.7e-61 238.4 203 67.5
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-60 236.5 203 67.0
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.4e-60 236.1 203 66.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 7.8e-56 221.1 198 66.7
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 7.8e-56 221.1 198 66.7
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 5.1e-55 218.4 202 64.9
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 5.1e-55 218.4 202 64.9
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 9.6e-54 214.2 199 66.8
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.4e-51 205.7 180 68.9
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 3.6e-45 185.7 203 54.7
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-43 179.5 197 57.4
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.6e-37 160.2 163 58.3
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.8e-37 159.5 228 43.4
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.7e-37 159.1 235 46.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 3.7e-37 159.1 235 46.4
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 8.1e-37 157.9 221 48.0
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.8e-36 156.8 209 47.4
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.4e-36 156.4 207 45.4
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 4.0e-36 155.6 239 44.8
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.2e-35 154.1 234 44.0
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-35 154.1 227 44.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.2e-35 154.1 206 47.1
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 2.6e-35 152.9 229 46.7
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.3e-34 150.6 222 45.5
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.7e-34 150.2 228 45.2
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.2e-34 149.8 166 50.0
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 3.8e-34 149.1 246 43.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 3.8e-34 149.1 213 46.9
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 8.4e-34 147.9 227 44.1
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.9e-33 146.7 213 44.6
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.9e-33 146.7 212 46.7
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 5.5e-33 145.2 218 44.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 7.1e-33 144.8 218 43.1
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 7.1e-33 144.8 222 40.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 9.3e-33 144.4 219 42.5
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.2e-32 144.1 208 47.1
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.5e-32 142.5 213 46.0
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.0e-31 141.0 170 45.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 3.0e-31 139.4 206 44.2
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 3.0e-31 139.4 198 44.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 5.1e-31 138.7 213 42.7
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.7e-31 138.3 219 41.6
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 8.7e-31 137.9 238 40.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.1e-30 137.5 230 42.6
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.9e-30 136.7 208 42.8
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.5e-30 136.3 254 40.6
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.3e-30 136.0 219 42.9
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 3.3e-30 136.0 222 41.9
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.6e-30 134.4 217 44.2
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.1e-29 133.3 194 45.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.3e-29 131.7 220 42.7
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.8e-28 130.2 231 43.3
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.1e-28 129.0 201 45.3
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 5.3e-28 128.6 236 39.0
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 9.0e-28 127.9 224 40.2
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 9.0e-28 127.9 213 41.8
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.2e-27 127.5 197 43.1
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.0e-27 126.7 226 42.0
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.0e-27 126.7 192 43.8
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.4e-27 125.9 185 46.5
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 3.4e-27 125.9 161 46.0
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.5e-27 125.6 216 39.4
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.5e-27 125.6 100 60.0
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.7e-26 123.6 201 44.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.0e-26 122.1 169 43.2
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 5.0e-26 122.1 226 40.3
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 5.0e-26 122.1 188 45.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.0e-26 122.1 232 39.7
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 5.0e-26 122.1 232 39.7
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 6.5e-26 121.7 195 40.5
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 8.4e-26 121.3 77 68.8
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 8.4e-26 121.3 235 38.7
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.1e-25 120.9 125 53.6
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.4e-25 120.6 231 37.7
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.9e-25 120.2 184 41.8
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 3.2e-25 119.4 209 40.7
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 3.2e-25 119.4 196 39.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 4.2e-25 119.0 261 34.9
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 5.5e-25 118.6 133 45.9
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 7.2e-25 118.2 189 40.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 7.2e-25 118.2 219 37.9
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 9.3e-25 117.9 152 46.1
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.6e-24 117.1 265 36.6
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 1.6e-24 117.1 230 36.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.6e-24 117.1 224 40.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.6e-24 117.1 204 40.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.1e-24 116.7 170 44.1
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 2.1e-24 116.7 233 38.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.7e-24 116.3 225 37.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 4.6e-24 115.5 201 42.3
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.1e-24 115.2 206 39.8
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.0e-23 114.4 102 55.9
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.3e-23 114.0 92 58.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.8e-23 113.6 194 39.7
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.8e-23 113.6 92 58.7
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.3e-23 113.2 265 36.6
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.3e-23 113.2 209 39.7
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 2.3e-23 113.2 178 41.0
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 3.9e-23 112.5 234 36.8
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 5.1e-23 112.1 253 37.2
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 5.1e-23 112.1 90 57.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 6.7e-23 111.7 179 40.2
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 1.9e-22 110.2 76 63.2
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.5e-22 109.8 190 37.4
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.7e-22 108.6 207 38.6
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 1.3e-21 107.5 233 39.1
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.3e-21 107.5 107 53.3
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-21 107.1 127 56.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 6.3e-21 105.1 102 51.0
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 8.2e-21 104.8 99 54.5
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.4e-20 104.0 118 47.5
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.8e-20 103.6 111 48.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 5.3e-20 102.1 194 37.1
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 6.9e-20 101.7 111 50.5
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-19 100.5 222 35.6
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 7.7e-19 98.2 77 57.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.3e-18 97.4 97 60.8
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.8e-18 95.9 123 41.5
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.8e-18 95.9 72 59.7
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 8.5e-18 94.7 174 33.9
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.4e-17 94.0 97 59.8
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 5.5e-17 92.0 218 32.6
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.7e-16 89.7 206 39.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.1e-16 88.6 97 57.7
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 2.3e-15 86.7 162 38.9
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 3.0e-15 86.3 76 67.1
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.9e-15 85.9 189 40.2
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-14 83.6 104 44.2
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 5.7e-14 82.0 107 45.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 9.7e-14 81.3 105 41.9
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 2.8e-13 79.7 83 62.7
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 3.1e-12 76.3 90 51.1
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 9.1e-12 74.7 106 50.9
BolC7t44010H Brassica oleracea HOM05D000067 ORTHO05D000280 2.3e-07 60.1 70 54.3
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.0e-07 59.7 158 34.8
BcaC02g09253 Brassica carinata HOM05D035837 ORTHO05D032574 1.1e-06 57.8 85 48.2
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 3.3e-06 56.2 146 30.8


User provided reference genes

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