Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.1e-306 1054.3 517 100.0
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.5e-292 1008.1 518 95.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 3.2e-279 964.5 520 90.6
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 4.6e-254 880.9 521 84.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 6.7e-253 877.1 521 84.3
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.5e-239 832.0 518 81.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.2e-239 831.2 518 81.3
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 9.4e-239 830.1 523 80.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-237 826.2 519 80.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 6.3e-235 817.4 519 80.0
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 5.9e-233 810.8 515 78.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-231 805.8 520 78.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 9.4e-231 803.5 523 78.6
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 4.7e-230 801.2 520 77.7
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 6.1e-230 800.8 519 78.0
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.0e-229 800.0 519 78.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 7.8e-209 730.7 523 70.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 4.4e-196 688.3 525 67.0
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.9e-176 622.1 405 77.8
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 7.9e-153 544.7 532 52.8
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.0e-152 542.7 531 52.7
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 5.8e-148 528.5 522 52.3
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 4.9e-147 525.4 541 50.6
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.5e-147 525.0 522 51.9
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.5e-147 525.0 522 51.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-146 523.5 519 52.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 7.1e-146 521.5 524 52.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.3e-142 510.8 522 50.6
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 3.7e-142 509.2 523 51.4
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.1e-141 505.8 557 49.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.1e-141 505.8 557 49.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 5.3e-141 505.4 533 48.4
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 6.9e-141 505.0 524 50.6
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 9.0e-141 504.6 526 50.2
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.2e-140 504.2 529 49.9
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.2e-139 500.0 541 48.8
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.5e-139 498.0 559 48.5
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.4e-138 497.3 541 48.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.9e-138 496.9 524 49.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 7.2e-138 495.0 533 48.8
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.2e-138 495.0 533 47.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 9.3e-138 494.6 531 49.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.0e-136 491.1 524 49.2
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.0e-136 491.1 518 50.4
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.8e-136 490.3 523 48.6
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.0e-136 489.6 530 49.6
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 6.7e-136 488.4 558 47.7
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 8.8e-136 488.0 529 48.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.9e-135 486.9 541 49.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.3e-134 484.2 544 49.1
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 3.7e-134 482.6 525 50.9
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-133 481.1 521 48.0
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-133 480.7 552 48.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.4e-133 479.9 530 49.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 5.3e-133 478.8 554 46.8
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.2e-132 477.6 530 49.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.5e-132 477.2 528 48.7
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.6e-132 476.5 530 49.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.9e-132 475.3 520 48.5
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.8e-131 472.6 547 46.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 5.0e-131 472.2 522 48.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.2e-130 469.5 528 47.2
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.2e-130 469.5 545 44.4
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 7.2e-130 468.4 541 47.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.2e-129 467.6 510 49.6
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.1e-129 466.8 528 48.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-129 466.8 522 48.3
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 2.7e-129 466.5 551 47.0
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 7.9e-129 464.9 527 47.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.0e-128 464.5 518 49.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 3.0e-128 463.0 523 46.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.0e-127 460.3 545 45.7
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.0e-127 460.3 521 45.7
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.3e-127 459.5 519 46.2
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 5.7e-127 458.8 518 45.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.7e-126 456.1 518 45.8
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.7e-126 456.1 516 45.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 3.7e-126 456.1 526 45.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.4e-125 454.1 526 46.0
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.8e-125 453.8 523 46.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 3.1e-125 453.0 560 46.6
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 9.1e-125 451.4 522 46.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 4.5e-124 449.1 535 45.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 7.7e-124 448.4 527 46.5
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-123 447.6 522 48.7
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.5e-123 444.9 480 47.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.4e-122 444.1 522 46.2
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 5.5e-122 442.2 564 43.6
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 8.0e-121 438.3 540 44.4
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.3e-119 433.0 555 44.9
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.3e-118 431.0 514 45.7
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.3e-118 431.0 510 44.5
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.8e-118 429.9 529 44.2
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.7e-115 420.6 546 43.6
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.1e-113 413.7 508 42.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.0e-112 411.4 501 46.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.4e-112 411.0 529 44.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 5.2e-112 409.1 519 45.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.0e-111 407.1 560 41.2
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.4e-111 406.0 517 41.8
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 4.1e-109 399.4 523 41.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.9e-106 390.6 474 44.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.4e-104 384.4 470 47.9
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.3e-104 383.6 522 42.7
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 3.4e-103 379.8 514 41.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 7.7e-100 368.6 512 40.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 7.7e-100 368.6 535 39.6
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-98 364.0 499 41.3
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.0e-96 358.2 525 39.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.0e-96 356.7 527 38.9
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.3e-94 351.3 535 40.9
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.7e-94 349.7 538 40.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.3e-91 341.3 504 38.9
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 4.7e-89 332.8 530 36.6
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.6e-87 327.0 511 36.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-85 320.5 497 38.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.7e-83 314.3 523 38.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.1e-82 311.6 518 36.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.8e-79 299.3 481 38.0
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.6e-76 291.2 559 34.7
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-69 268.5 474 35.2
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-69 268.1 474 35.2
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.6e-68 263.1 517 33.7
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-67 261.9 517 33.8
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-67 261.5 520 34.2
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.9e-55 218.8 462 31.8
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.9e-55 218.8 462 31.8
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.9e-51 206.8 518 29.5
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.9e-45 188.0 266 39.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-43 180.6 385 31.7
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.9e-40 169.5 501 27.9
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.7e-38 164.9 493 27.4
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 4.2e-37 160.2 317 33.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.3e-37 159.1 143 54.5
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.3e-35 154.5 494 26.5
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.0e-35 154.1 175 43.4
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 6.7e-35 152.9 463 26.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.5e-31 140.2 146 45.9
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.6e-31 139.4 412 26.9
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.1e-27 126.7 447 25.7
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.9e-26 124.8 492 25.0
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-18 98.6 77 54.5
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-17 94.7 508 23.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.0e-15 88.2 389 25.4
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-13 82.4 288 29.5
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.8e-11 75.1 87 36.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 3.3e-10 70.9 121 29.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 9.7e-10 69.3 102 34.3
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 9.7e-10 69.3 70 44.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 8.2e-09 66.2 61 50.8
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-08 65.5 57 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.4e-08 64.7 63 41.3
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 4.1e-08 63.9 209 26.8
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 5.3e-08 63.5 209 26.8
BcaC07g38319 Brassica carinata HOM05D001805 ORTHO05D001734 1.5e-07 62.0 38 78.9
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.5e-07 62.0 57 49.1
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.5e-07 62.0 133 29.3


User provided reference genes

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