Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.2e-183 646.4 335 100.0
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.1e-158 563.5 339 87.3
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 9.0e-158 560.5 343 88.0
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 8.4e-156 553.9 341 85.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.5e-155 551.2 339 85.3
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.3e-152 541.6 338 84.6
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-147 526.6 341 82.7
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 7.2e-139 497.7 339 80.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.0e-137 493.8 338 79.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-137 493.0 338 79.3
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.3e-135 486.9 339 79.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 8.2e-135 484.2 339 78.2
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 4.1e-134 481.9 340 79.7
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.2e-133 480.3 337 75.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 4.5e-133 478.4 338 77.5
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 4.5e-133 478.4 338 77.5
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 8.5e-132 474.2 343 78.4
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 3.6e-130 468.8 339 76.4
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.6e-125 452.6 336 74.4
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.9e-123 446.4 339 73.2
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.6e-122 443.4 337 71.8
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.9e-121 438.7 340 71.5
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 5.2e-121 438.3 337 73.3
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.6e-120 436.0 337 72.4
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-118 427.9 340 72.9
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 9.1e-118 427.6 340 72.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.2e-116 422.9 340 72.6
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.2e-116 422.9 340 72.6
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.5e-116 421.4 344 70.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 9.4e-115 417.5 340 72.9
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 7.5e-112 407.9 338 69.8
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.7e-111 406.8 339 71.1
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.0e-108 397.5 343 65.6
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.2e-107 392.1 344 64.5
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.1e-106 388.3 337 65.0
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.1e-106 388.3 344 64.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.2e-104 384.0 346 64.2
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.6e-104 382.9 348 62.9
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.4e-104 382.5 345 62.6
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.7e-103 380.2 357 61.6
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.2e-103 379.8 346 64.2
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.2e-103 379.8 345 62.3
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.2e-103 379.8 345 62.6
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.8e-103 379.4 345 62.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 4.8e-103 378.6 346 62.4
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.0e-101 373.2 346 63.3
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-101 372.9 344 62.5
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.5e-101 372.1 344 62.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.0e-100 370.9 345 62.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.3e-100 370.5 346 63.0
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.3e-100 370.5 344 62.8
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.8e-100 369.0 346 62.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 5.0e-100 368.6 349 61.3
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.5e-99 366.3 352 61.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-99 365.9 344 62.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.2e-98 364.0 344 61.6
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.0e-97 360.9 344 61.3
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.4e-97 360.5 347 61.4
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.8e-97 360.1 346 62.7
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.8e-97 358.2 344 61.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 8.8e-97 357.8 345 59.7
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.2e-96 357.5 350 61.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 2.6e-96 356.3 345 59.7
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.5e-96 354.8 337 62.9
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.3e-95 354.0 346 57.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 3.1e-94 349.4 350 60.6
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.1e-94 349.0 341 59.5
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.4e-94 348.6 345 59.7
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.2e-94 347.8 337 61.4
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.0e-93 346.7 347 59.4
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 3.5e-93 345.9 406 54.4
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.9e-92 342.8 347 61.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.9e-92 342.8 345 58.8
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.8e-92 342.4 347 61.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 6.6e-92 341.7 346 56.9
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.5e-91 339.7 347 58.5
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.3e-91 339.0 345 58.0
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 5.6e-91 338.6 345 57.7
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 7.3e-91 338.2 345 56.2
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 9.5e-91 337.8 345 56.8
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.6e-90 337.0 344 58.1
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.1e-90 336.7 396 53.3
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 4.7e-90 335.5 345 57.1
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.0e-89 334.3 327 58.7
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.4e-89 334.0 347 58.2
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.8e-89 333.6 346 59.2
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 4.0e-89 332.4 342 60.5
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 8.9e-89 331.3 339 59.3
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.0e-88 330.1 343 56.3
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.7e-88 328.6 342 57.6
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 9.8e-88 327.8 414 51.7
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.3e-87 327.4 345 58.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-87 327.4 349 57.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 4.9e-87 325.5 329 61.4
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 6.4e-87 325.1 347 57.3
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 8.3e-87 324.7 346 57.5
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.4e-86 323.2 350 56.9
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.2e-86 322.8 344 57.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 4.1e-86 322.4 346 57.2
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.5e-85 319.3 345 57.1
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 5.9e-85 318.5 336 59.8
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.8e-85 318.2 340 58.5
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.0e-84 317.8 346 56.6
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 5.0e-84 315.5 359 56.8
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 5.0e-84 315.5 338 56.8
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 5.0e-84 315.5 350 57.4
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 6.6e-84 315.1 391 52.4
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.1e-83 314.3 326 60.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 9.5e-83 311.2 281 61.9
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 8.0e-82 308.1 343 53.6
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.4e-81 307.4 336 55.4
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.8e-81 307.0 324 58.0
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 4.0e-81 305.8 323 57.3
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.2e-80 304.3 345 56.5
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.4e-80 302.8 347 55.0
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 5.8e-80 302.0 320 60.3
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 7.5e-80 301.6 348 54.3
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 9.8e-80 301.2 348 54.3
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 8.3e-79 298.1 343 53.9
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-78 297.7 351 56.1
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 2.4e-78 296.6 335 56.7
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 4.1e-78 295.8 345 55.1
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 5.4e-78 295.4 300 59.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 2.7e-77 293.1 346 54.6
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.5e-77 292.7 351 51.6
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.8e-77 291.6 354 50.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.0e-76 291.2 348 51.7
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.8e-74 283.1 327 52.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 3.6e-74 282.7 337 52.5
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.5e-72 277.3 327 52.9
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.7e-71 272.7 344 50.0
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 3.7e-71 272.7 278 62.2
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.4e-70 270.0 341 49.9
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.2e-70 269.6 201 76.1
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.0e-68 264.6 343 49.3
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.3e-68 263.5 342 49.4
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 6.6e-68 261.9 340 50.0
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 6.6e-68 261.9 352 47.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 8.6e-68 261.5 344 49.7
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.5e-64 250.8 243 59.3
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.4e-64 249.2 262 57.6
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.3e-63 247.7 359 48.5
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.1e-62 242.7 275 56.0
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 6.9e-57 225.3 329 48.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 8.1e-50 201.8 262 50.8
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 2.0e-48 197.2 340 43.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.8e-31 139.8 392 33.2
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.7e-29 133.7 245 40.8
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.1e-28 129.4 339 34.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 3.4e-24 116.7 147 49.7
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 9.1e-17 92.0 160 41.2
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.0e-15 88.6 156 40.4
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 7.2e-14 82.4 109 46.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 3.6e-13 80.1 229 31.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.7e-10 71.2 196 31.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 5.9e-08 62.8 373 25.7
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.2e-07 60.8 133 36.1


User provided reference genes

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