Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 6.8e-99 364.0 185 100.0
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 9.2e-96 353.6 185 97.3
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 2.4e-88 328.9 186 90.3
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 4.6e-87 324.7 186 90.9
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 3.0e-86 322.0 186 88.7
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 2.8e-84 315.5 186 87.6
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 4.7e-84 314.7 186 88.2
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 4.7e-84 314.7 186 88.2
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 8.9e-83 310.5 188 87.2
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 3.4e-82 308.5 189 84.1
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 5.8e-82 307.8 197 81.7
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 2.7e-79 298.9 200 78.5
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 1.9e-77 292.7 189 82.0
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 2.5e-77 292.4 225 72.9
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 3.5e-71 271.9 166 86.7
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 5.1e-70 268.1 189 74.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 3.2e-64 248.8 151 83.4
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 2.5e-61 239.2 134 90.3
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.5e-61 239.2 188 66.5
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.5e-61 239.2 188 66.5
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 1.6e-60 236.5 185 72.4
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 2.4e-59 232.6 185 65.4
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 4.0e-59 231.9 185 64.3
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 4.0e-59 231.9 185 63.2
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 9.0e-59 230.7 185 64.3
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.2e-58 230.3 185 64.3
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.5e-58 229.9 185 64.3
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 4.5e-58 228.4 185 63.2
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 7.6e-58 227.6 186 64.5
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 1.7e-57 226.5 186 62.4
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 2.2e-57 226.1 185 64.9
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 2.9e-57 225.7 186 62.9
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 8.4e-57 224.2 185 63.8
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 1.1e-56 223.8 186 64.0
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.9e-56 223.0 185 63.8
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 2.5e-56 222.6 186 63.4
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 4.2e-56 221.9 186 64.0
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.5e-56 221.5 185 63.8
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 2.1e-55 219.5 192 60.4
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 2.1e-55 219.5 190 63.2
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 2.7e-55 219.2 188 61.2
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 3.5e-55 218.8 187 59.9
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 6.0e-55 218.0 188 64.9
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 6.0e-55 218.0 187 59.4
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 1.0e-54 217.2 189 60.8
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 1.8e-54 216.5 190 62.6
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 3.0e-54 215.7 186 62.4
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 3.9e-54 215.3 185 60.0
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 3.9e-54 215.3 187 61.0
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 5.1e-54 214.9 193 62.2
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 6.7e-54 214.5 187 62.0
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 1.1e-53 213.8 186 58.6
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 1.9e-53 213.0 185 59.5
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 3.3e-53 212.2 185 60.0
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 3.3e-53 212.2 185 60.0
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 3.3e-53 212.2 187 59.4
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 4.3e-53 211.8 186 59.7
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 5.7e-53 211.5 190 57.9
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 7.4e-53 211.1 188 59.6
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 7.4e-53 211.1 185 60.0
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 7.4e-53 211.1 188 59.0
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.6e-52 209.9 187 60.4
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 2.8e-52 209.1 186 60.2
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 3.7e-52 208.8 186 59.1
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 6.3e-52 208.0 190 59.5
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.4e-51 206.1 137 71.5
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 2.4e-51 206.1 187 59.4
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 3.1e-51 205.7 187 57.2
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 6.9e-51 204.5 137 71.5
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 1.2e-50 203.8 189 61.4
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.5e-50 203.4 189 59.3
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 2.0e-50 203.0 186 59.1
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 5.9e-50 201.4 175 62.3
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.3e-49 200.3 141 68.8
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.7e-49 199.9 141 68.1
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 3.8e-49 198.7 187 55.1
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 5.0e-49 198.4 186 54.8
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 8.5e-49 197.6 186 58.1
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 1.9e-48 196.4 185 55.1
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 2.5e-48 196.1 214 52.3
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 2.5e-48 196.1 233 50.2
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 3.2e-48 195.7 132 70.5
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 2.3e-46 189.5 185 55.7
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 1.5e-45 186.8 186 54.3
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 3.3e-45 185.7 139 65.5
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 2.8e-44 182.6 168 57.7
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 4.8e-44 181.8 189 53.4
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.8e-43 179.9 148 65.5
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 3.1e-43 179.1 184 51.1
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 9.1e-43 177.6 207 49.3
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 7.7e-42 174.5 128 64.1
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.7e-41 173.3 148 60.1
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 2.2e-41 172.9 149 60.4
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 5.0e-41 171.8 188 50.0
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.2e-39 167.2 129 64.3
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 6.1e-39 164.9 192 50.0
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 2.0e-37 159.8 135 65.2
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 7.4e-37 157.9 190 48.9
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 1.3e-36 157.1 101 74.3
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.3e-33 147.1 206 44.2
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.7e-33 146.7 91 73.6
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.6e-31 140.2 118 60.2
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 3.3e-29 132.5 126 58.7
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 3.7e-28 129.0 169 47.9
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.1e-27 125.9 74 71.6
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.7e-25 120.2 85 64.7
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.9e-25 119.4 122 59.8
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.9e-25 119.4 122 59.8
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 8.0e-23 111.3 201 39.8
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 6.7e-22 108.2 197 34.5
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 7.7e-18 94.7 172 37.8
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 3.8e-17 92.4 111 56.8
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 3.8e-17 92.4 114 51.8
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 1.1e-08 64.3 47 61.7
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 2.5e-08 63.2 114 42.1
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 8.0e-07 58.2 69 50.7


User provided reference genes

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