Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 5.8e-83 310.8 157 100.0
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.9e-43 177.9 103 87.4
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 1.0e-42 177.2 135 74.1
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.2e-40 170.2 131 74.0
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-40 170.2 132 75.0
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 1.3e-37 160.2 132 72.0
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 1.3e-37 160.2 132 72.0
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 1.3e-37 160.2 132 72.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 8.2e-37 157.5 135 73.3
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 1.2e-32 143.7 134 68.7
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.0e-32 141.0 133 58.6
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 3.3e-30 135.6 134 64.2
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.7e-30 134.8 139 57.6
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 8.2e-29 131.0 131 57.3
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 7.0e-28 127.9 131 57.3
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 2.0e-27 126.3 134 59.0
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 7.7e-27 124.4 131 58.8
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 2.2e-26 122.9 138 54.3
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 6.5e-26 121.3 130 58.5
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-24 117.1 112 56.2
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.0e-23 114.0 116 58.6
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 4.0e-23 112.1 118 55.9
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 9.8e-22 107.5 140 51.4
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-21 106.3 118 50.8
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 8.3e-21 104.4 121 52.1
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.1e-20 104.0 119 50.4
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 1.9e-17 93.2 118 49.2
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 2.1e-16 89.7 134 42.5
Sp1g13240 Schrenkiella parvula HOM05D009587 ORTHO05D004912 1.2e-14 84.0 82 63.4
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 1.7e-13 80.1 138 44.9
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 4.5e-11 72.0 135 41.5
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.3e-10 70.5 134 44.0
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 8.6e-10 67.8 132 39.4
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.5e-09 66.2 146 39.7
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 5.6e-09 65.1 136 40.4
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.3e-09 64.7 143 39.2
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 7.3e-09 64.7 133 38.3
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 9.5e-09 64.3 111 44.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.2e-08 63.9 146 39.0
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 6.1e-08 61.6 107 40.2
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 6.1e-08 61.6 127 38.6
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.0e-07 60.8 127 37.8
BcaB01g04337 Brassica carinata HOM05D009587 ORTHO05D004912 1.8e-07 60.1 56 60.7
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 4.0e-07 58.9 134 34.3
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 4.0e-07 58.9 138 37.7
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 6.8e-07 58.2 127 37.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 6.8e-07 58.2 144 36.1
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 6.8e-07 58.2 129 35.7
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 8.9e-07 57.8 119 39.5
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 8.9e-07 57.8 129 36.4
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 1.2e-06 57.4 138 34.8
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.2e-06 57.4 120 37.5
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.2e-06 57.4 135 37.8
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.5e-06 57.0 108 35.2
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.5e-06 57.0 131 34.4
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.0e-06 56.6 129 35.7
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.0e-06 56.6 127 36.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 2.6e-06 56.2 127 36.2
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 3.4e-06 55.8 126 31.7
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.4e-06 55.8 129 35.7
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.4e-06 55.5 131 33.6
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.4e-06 55.5 129 35.7
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.5e-06 54.7 128 36.7
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.5e-06 54.7 128 36.7
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 9.8e-06 54.3 117 39.3


User provided reference genes

Program Settings