Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.3e-57 224.6 114 100.0
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 4.1e-41 171.8 114 78.1
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.3e-39 166.0 114 75.4
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 3.8e-39 165.2 114 75.4
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 8.6e-39 164.1 114 73.7
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 4.3e-38 161.8 114 72.8
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.2e-35 153.7 114 71.9
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.2e-35 153.7 114 71.9
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 3.9e-31 138.7 114 64.9
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 9.2e-25 117.5 72 70.8
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.6e-24 116.7 116 56.9
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 3.0e-23 112.5 121 54.5
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 3.0e-23 112.5 121 54.5
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 3.9e-23 112.1 118 54.2
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 6.6e-23 111.3 121 54.5
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.1e-22 110.5 122 53.3
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 9.5e-22 107.5 106 53.8
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 9.5e-22 107.5 119 49.6
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 4.0e-20 102.1 81 60.5
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 5.2e-20 101.7 119 53.8
AL7G25970 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 6.8e-20 101.3 70 85.7
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 8.9e-20 100.9 124 53.2
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 8.9e-20 100.9 81 60.5
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 9.8e-19 97.4 124 48.4
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 1.3e-18 97.1 123 50.4
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 1.3e-18 97.1 123 50.4
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.7e-18 96.7 122 49.2
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 6.4e-18 94.7 71 63.4
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-17 94.0 70 64.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-17 94.0 70 64.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.1e-17 94.0 70 64.3
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 1.4e-17 93.6 125 48.0
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 1.9e-17 93.2 126 48.4
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 2.4e-17 92.8 126 46.8
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 4.1e-17 92.0 69 62.3
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 5.4e-17 91.7 71 62.0
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 7.1e-17 91.3 123 48.0
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 7.1e-17 91.3 123 48.0
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 7.1e-17 91.3 123 48.0
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 3.5e-16 89.0 125 48.8
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 6.0e-16 88.2 123 46.3
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 6.0e-16 88.2 121 45.5
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 7.8e-16 87.8 118 44.9
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 3.9e-15 85.5 116 45.7
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 5.1e-15 85.1 109 45.0
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 8.6e-15 84.3 120 45.8
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 1.5e-14 83.6 72 51.4
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 1.9e-14 83.2 56 64.3
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.5e-14 82.8 100 48.0
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 7.3e-14 81.3 126 40.5
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 9.5e-14 80.9 120 44.2
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 9.5e-14 80.9 68 57.4
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.2e-13 80.5 120 44.2
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.2e-13 80.5 116 44.0
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 1.6e-13 80.1 116 40.5
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.6e-13 80.1 120 42.5
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 1.6e-13 80.1 120 42.5
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 2.1e-13 79.7 124 42.7
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 2.1e-13 79.7 129 40.3
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 2.1e-13 79.7 126 41.3
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 3.6e-13 79.0 116 40.5
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 3.6e-13 79.0 121 42.1
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 4.7e-13 78.6 119 42.0
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 6.2e-13 78.2 73 50.7
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 8.1e-13 77.8 111 42.3
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-12 77.4 80 50.0
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.1e-12 77.4 80 50.0
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.1e-12 77.4 120 42.5
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 1.1e-12 77.4 128 43.0
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-12 77.4 71 59.2
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 1.4e-12 77.0 124 43.5
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 1.4e-12 77.0 119 46.2
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 1.8e-12 76.6 80 47.5
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 2.3e-12 76.3 130 36.9
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 3.1e-12 75.9 129 41.9
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 3.1e-12 75.9 68 54.4
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 4.0e-12 75.5 118 39.0
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 4.0e-12 75.5 122 43.4
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 4.0e-12 75.5 67 53.7
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 5.2e-12 75.1 122 39.3
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 5.2e-12 75.1 126 37.3
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 6.8e-12 74.7 72 50.0
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 6.8e-12 74.7 118 46.6
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 6.8e-12 74.7 115 41.7
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 8.9e-12 74.3 74 56.8
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 1.2e-11 73.9 120 40.8
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 1.5e-11 73.6 119 40.3
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-11 73.6 119 40.3
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.5e-11 73.6 119 43.7
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.5e-11 73.6 121 41.3
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 2.0e-11 73.2 119 40.3
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 2.0e-11 73.2 128 39.8
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.0e-11 73.2 119 41.2
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 2.6e-11 72.8 69 52.2
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 2.6e-11 72.8 71 54.9
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 2.6e-11 72.8 68 57.4
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 2.6e-11 72.8 112 46.4
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 3.4e-11 72.4 119 40.3
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 3.4e-11 72.4 119 40.3
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 119 40.3
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.4e-11 72.4 119 40.3
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 3.4e-11 72.4 125 38.4
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 3.4e-11 72.4 125 38.4
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 4.4e-11 72.0 120 40.8
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.4e-11 72.0 119 40.3
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 4.4e-11 72.0 122 40.2
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.4e-11 72.0 120 40.8
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 5.8e-11 71.6 122 37.7
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 7.6e-11 71.2 126 41.3
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 7.6e-11 71.2 132 37.9
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 7.6e-11 71.2 117 39.3
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 7.6e-11 71.2 131 41.2
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 7.6e-11 71.2 120 40.0
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 9.9e-11 70.9 122 42.6
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 9.9e-11 70.9 120 42.5
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 9.9e-11 70.9 118 44.9
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 1.7e-10 70.1 73 49.3
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 2.2e-10 69.7 129 40.3
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 2.9e-10 69.3 113 40.7
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 3.8e-10 68.9 117 39.3
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.8e-10 68.9 119 40.3
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 3.8e-10 68.9 74 45.9
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 4.9e-10 68.6 129 38.0
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 6.4e-10 68.2 66 48.5
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 6.4e-10 68.2 125 36.0
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 8.4e-10 67.8 116 41.4
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 1.4e-09 67.0 119 35.3
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 1.4e-09 67.0 111 37.8
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 3.2e-09 65.9 124 38.7
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 3.2e-09 65.9 128 37.5
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 4.1e-09 65.5 131 36.6
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 9.2e-09 64.3 125 35.2
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.2e-08 63.9 75 46.7
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 2.7e-08 62.8 131 38.9
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 2.7e-08 62.8 131 35.9
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 3.5e-08 62.4 128 32.8
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 1.0e-07 60.8 118 39.8
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 1.0e-07 60.8 116 39.7
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 1.3e-07 60.5 110 39.1
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 2.3e-07 59.7 127 35.4
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.0e-07 59.3 74 40.5
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.0e-07 59.3 118 38.1
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 1.5e-06 57.0 60 45.0
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 2.5e-06 56.2 119 35.3
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 3.3e-06 55.8 123 32.5
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.3e-06 55.8 112 33.0
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 3.3e-06 55.8 126 33.3
arahy.Tifrunner.gnm1.ann1.J355LQ Arachis hypogaea HOM05D002014 ORTHO05D001958 4.3e-06 55.5 70 41.4
Phvul.006G147300 Phaseolus vulgaris HOM05D002014 ORTHO05D001958 4.3e-06 55.5 115 33.0
ATR0585G040 Amborella trichopoda HOM05D002014 ORTHO05D001958 5.6e-06 55.1 59 40.7
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 5.6e-06 55.1 144 31.9
ClCG03G004340 Citrullus lanatus HOM05D002014 ORTHO05D001958 7.3e-06 54.7 48 47.9
MELO3C002422.2 Cucumis melo HOM05D002014 ORTHO05D001958 7.3e-06 54.7 48 47.9
CsaV3_1G010310 Cucumis sativus L. HOM05D002014 ORTHO05D001958 7.3e-06 54.7 48 47.9
Gohir.D05G372800 Gossypium hirsutum HOM05D004357 ORTHO05D005064 7.3e-06 54.7 106 34.0
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 9.6e-06 54.3 59 45.8


User provided reference genes

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