Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26460 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 7.3e-74 280.4 136 100.0
BcaC09g50701 Brassica carinata HOM05D000149 ORTHO05D000076 8.5e-14 80.9 77 50.6
A01p17640 Brassica napus HOM05D000149 ORTHO05D000076 8.5e-14 80.9 77 50.6
BolC1t02158H Brassica oleracea HOM05D000149 ORTHO05D000076 8.5e-14 80.9 77 50.6
BraA01t01718Z Brassica rapa HOM05D000149 ORTHO05D000076 8.5e-14 80.9 77 50.6
BcaNung02421 Brassica carinata HOM05D000149 ORTHO05D000076 1.1e-13 80.5 77 49.4
C01p22280 Brassica napus HOM05D000149 ORTHO05D000076 1.1e-13 80.5 77 50.6
Carub.0008s1662 Capsella rubella HOM05D000149 ORTHO05D000076 1.4e-13 80.1 74 52.7
BcaB01g04391 Brassica carinata HOM05D000149 ORTHO05D000076 1.9e-13 79.7 69 55.1
BcaNung05646 Brassica carinata HOM05D000149 ORTHO05D000076 1.9e-13 79.7 69 55.1
AL8G31930 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 2.5e-13 79.3 74 51.4
CARHR233980 Cardamine hirsuta HOM05D000149 ORTHO05D000076 2.5e-13 79.3 121 38.0
AL7G26530 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 4.2e-13 78.6 77 48.1
AT4G26420 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 4.2e-13 78.6 77 50.6
BcaC01g06415 Brassica carinata HOM05D000149 ORTHO05D000076 5.5e-13 78.2 64 57.8
BolC3t14018H Brassica oleracea HOM05D000149 ORTHO05D000076 5.5e-13 78.2 64 57.8
CARHR269700 Cardamine hirsuta HOM05D000149 ORTHO05D000076 5.5e-13 78.2 74 51.4
C03p15870 Brassica napus HOM05D000149 ORTHO05D000076 7.2e-13 77.8 64 57.8
C09p47750 Brassica napus HOM05D000149 ORTHO05D000076 7.2e-13 77.8 69 52.2
Carub.0007s1453 Capsella rubella HOM05D000149 ORTHO05D000076 9.4e-13 77.4 77 46.8
THA.LOC104811708 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 9.4e-13 77.4 64 56.2
Thhalv10013757m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 1.2e-12 77.0 69 52.2
BraA03t10662Z Brassica rapa HOM05D000149 ORTHO05D000076 1.6e-12 76.6 69 52.2
AT5G56300 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 2.1e-12 76.3 74 50.0
Aa31LG3G12210 Aethionema arabicum HOM05D000149 ORTHO05D009857 2.7e-12 75.9 69 49.3
Ciclev10017993m.g Citrus clementina HOM05D000149 ORTHO05D000076 2.7e-12 75.9 82 45.1
A03p13570 Brassica napus HOM05D000149 ORTHO05D000076 3.6e-12 75.5 69 50.7
Sp6g18150 Schrenkiella parvula HOM05D000149 ORTHO05D000076 3.6e-12 75.5 69 50.7
Sp7g24330 Schrenkiella parvula HOM05D000149 ORTHO05D000076 3.6e-12 75.5 77 45.5
GSVIVG01025514001 Vitis vinifera HOM05D000149 ORTHO05D000076 4.7e-12 75.1 121 33.1
Manes.15G111600 Manihot esculenta HOM05D000149 ORTHO05D000076 1.4e-11 73.6 82 43.9
Atru.chr3.2038 Acer truncatum HOM05D000149 ORTHO05D000076 2.3e-11 72.8 82 45.1
A08p20780 Brassica napus HOM05D000149 ORTHO05D000076 6.7e-11 71.2 64 51.6
BraA08t34032Z Brassica rapa HOM05D000149 ORTHO05D000076 1.1e-10 70.5 64 51.6
COL.COLO4_35059 Corchorus olitorius HOM05D000149 ORTHO05D000076 1.1e-10 70.5 77 45.5
MBI19_g24064_MAGBIO Magnolia biondii HOM05D000149 ORTHO05D000076 1.1e-10 70.5 86 39.5
Nn2g15919 Nelumbo nucifera HOM05D000149 ORTHO05D000076 1.1e-10 70.5 77 44.2
ATR0068G012 Amborella trichopoda HOM05D000149 ORTHO05D000076 1.5e-10 70.1 121 33.9
C08p09880 Brassica napus HOM05D008960 ORTHO05D019923 2.0e-10 69.7 64 50.0
TWI60G1465 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 2.6e-10 69.3 77 41.6
BcaC07g38234 Brassica carinata HOM05D000149 ORTHO05D000076 3.3e-10 68.9 64 53.1
BcaNung06322 Brassica carinata HOM05D000149 ORTHO05D000076 3.3e-10 68.9 64 53.1
C08p09850 Brassica napus HOM05D000149 ORTHO05D000076 3.3e-10 68.9 64 53.1
BolC8t48661H Brassica oleracea HOM05D000149 ORTHO05D000076 3.3e-10 68.9 64 53.1
Eucgr.J01721 Eucalyptus grandis HOM05D000149 ORTHO05D000076 4.4e-10 68.6 77 42.9
QL01p007741 Quercus lobata HOM05D000149 ORTHO05D000076 5.7e-10 68.2 86 39.5
TWI32G0997 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 5.7e-10 68.2 77 41.6
Mapoly0038s0025 Marchantia polymorpha HOM05D000149 ORTHO05D000076 7.4e-10 67.8 121 32.2
BcaC07g38238 Brassica carinata HOM05D000149 ORTHO05D000076 9.7e-10 67.4 64 48.4
Cfa009522 Carpinus fangiana HOM05D000149 ORTHO05D000076 9.7e-10 67.4 77 41.6
PSO339G2212 Papaver somniferum HOM05D000149 ORTHO05D000076 1.7e-09 66.6 77 41.6
PGR119G2156 Punica granatum HOM05D000149 ORTHO05D000076 2.2e-09 66.2 77 41.6
HPP92_007513 Vanilla planifolia HOM05D000149 ORTHO05D000076 2.2e-09 66.2 77 40.3
PSO384G0767 Papaver somniferum HOM05D000149 ORTHO05D000076 6.3e-09 64.7 77 40.3
ECA233G0838 Erigeron canadensis HOM05D000149 ORTHO05D000076 2.4e-08 62.8 77 44.2
SEGI_02660 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 7.0e-08 61.2 76 43.4
SEGI_35387 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 7.0e-08 61.2 76 43.4
Lj6A736T78 Lonicera japonica HOM05D000149 ORTHO05D000076 1.2e-07 60.5 77 39.0
HanXRQChr06g0171251 Helianthus annuus HOM05D000149 ORTHO05D000076 1.5e-07 60.1 77 39.0
SEGI_37081 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 2.0e-07 59.7 76 40.8
SEGI_11376 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 2.6e-07 59.3 76 40.8
SEGI_19530 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 2.6e-07 59.3 76 40.8
SEGI_29934 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 3.4e-07 58.9 76 42.1
AagrBONN_evm.TU.Sc2ySwM_344.5554 Anthoceros agrestis HOM05D000149 ORTHO05D000076 5.9e-07 58.2 121 25.6
CSS0006792 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 5.9e-07 58.2 76 39.5
CSS0048141 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 5.9e-07 58.2 76 39.5
Sabra17G0104200 Salix brachista HOM05D000149 ORTHO05D000076 5.9e-07 58.2 77 39.0
SEGI_05580 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 5.9e-07 58.2 76 42.1
Cc11_g09140 Coffea canephora HOM05D000149 ORTHO05D000076 1.0e-06 57.4 77 44.2
Lsat_1_v5_gn_3_26140 Lactuca sativa HOM05D000149 ORTHO05D000076 1.0e-06 57.4 77 40.3
MD13G1007200 Malus domestica HOM05D000149 ORTHO05D000076 1.0e-06 57.4 77 42.9
SEGI_07148 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.0e-06 57.4 76 40.8
MD06G1223300 Malus domestica HOM05D000149 ORTHO05D000076 1.3e-06 57.0 85 37.6
SEGI_07758 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.3e-06 57.0 76 39.5
SEGI_12169 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.3e-06 57.0 76 39.5
Thecc.04G125400 Theobroma cacao HOM05D000149 ORTHO05D000076 1.3e-06 57.0 77 36.4
CDE02G1647 Ceratophyllum demersum HOM05D000149 ORTHO05D000076 1.7e-06 56.6 86 33.7
SEGI_11382 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.7e-06 56.6 76 39.5
Sabra08G0104000 Salix brachista HOM05D000149 ORTHO05D000076 2.2e-06 56.2 85 40.0
Manes.17G085200 Manihot esculenta HOM05D000149 ORTHO05D000076 2.9e-06 55.8 77 40.3
Potri.017G122900 Populus trichocarpa HOM05D000149 ORTHO05D000076 2.9e-06 55.8 77 40.3
Potri.017G122950 Populus trichocarpa HOM05D000149 ORTHO05D000076 2.9e-06 55.8 77 40.3
Thecc.04G125300 Theobroma cacao HOM05D000149 ORTHO05D000076 2.9e-06 55.8 77 36.4
Duzib251G0572 Durio zibethinus HOM05D000149 ORTHO05D000076 3.8e-06 55.5 77 37.7
Eucgr.L01415 Eucalyptus grandis HOM05D000149 ORTHO05D000076 3.8e-06 55.5 126 29.4
Hma1.2p1_0836F.1_g225950 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 3.8e-06 55.5 77 40.3
Sabra17G0100800 Salix brachista HOM05D000149 ORTHO05D000076 3.8e-06 55.5 77 39.0
Eucgr.B02684 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.0e-06 55.1 77 40.3
Eucgr.K02253 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.0e-06 55.1 90 35.6
Eucgr.K02257 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.0e-06 55.1 90 35.6
Thecc.10G169800 Theobroma cacao HOM05D000149 ORTHO05D000076 5.0e-06 55.1 77 37.7
Eucgr.L01416 Eucalyptus grandis HOM05D000149 ORTHO05D000076 6.5e-06 54.7 90 35.6
MBI16_g32952_MAGBIO Magnolia biondii HOM05D000149 ORTHO05D000076 6.5e-06 54.7 78 37.2
Potri.017G122700 Populus trichocarpa HOM05D000149 ORTHO05D000076 6.5e-06 54.7 77 39.0
SalBow6G0864 Salvia bowleyana HOM05D000149 ORTHO05D000076 6.5e-06 54.7 77 37.7
RcHm_v2.0_Chr7g0178301 Rosa chinensis HOM05D000149 ORTHO05D000076 8.5e-06 54.3 77 35.1


User provided reference genes

Program Settings