Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 1.0e-162 576.6 288 100.0
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 1.2e-147 526.6 271 96.3
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.2e-137 493.4 288 86.5
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 6.2e-131 471.1 285 84.6
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 1.5e-129 466.5 286 85.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 2.1e-123 446.0 271 85.2
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 4.7e-123 444.9 288 79.5
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 4.7e-123 444.9 288 79.5
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 4.0e-122 441.8 288 79.5
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 4.0e-122 441.8 288 79.5
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.3e-117 426.0 271 81.2
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 1.8e-114 416.4 289 77.9
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.2e-73 280.8 303 59.4
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 1.2e-49 201.1 315 43.5
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 3.5e-49 199.5 321 43.3
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 3.8e-48 196.1 310 42.6
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 5.0e-48 195.7 305 42.6
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 5.0e-48 195.7 306 43.5
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 5.0e-48 195.7 306 43.5
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 1.1e-47 194.5 311 45.3
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.1e-47 194.5 285 48.1
C01p22270 Brassica napus HOM05D007298 ORTHO05D009226 3.2e-47 193.0 127 81.1
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 3.2e-47 193.0 307 45.6
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 4.2e-47 192.6 320 44.1
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 4.2e-47 192.6 285 47.4
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 2.1e-46 190.3 318 45.9
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 2.7e-46 189.9 305 46.2
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 4.7e-46 189.1 288 46.5
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 6.1e-46 188.7 285 47.4
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 8.0e-46 188.3 311 44.1
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 1.5e-44 184.1 117 79.5
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 2.0e-44 183.7 315 42.5
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 2.6e-44 183.3 271 45.0
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 4.4e-44 182.6 290 45.5
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 2.8e-43 179.9 297 44.4
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 8.3e-43 178.3 290 42.4
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 3.1e-42 176.4 285 43.9
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 7.0e-42 175.3 296 41.6
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 7.7e-41 171.8 305 40.7
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.3e-40 171.0 303 40.3
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.7e-40 170.6 281 43.1
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 3.8e-40 169.5 286 42.0
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 5.0e-40 169.1 318 43.1
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.1e-39 167.9 297 41.8
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.1e-39 167.9 272 42.3
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 1.5e-39 167.5 304 41.1
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.2e-38 164.5 311 41.8
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 1.2e-38 164.5 306 40.8
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.8e-38 163.3 259 42.9
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 3.6e-38 162.9 268 42.9
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 4.7e-38 162.5 294 41.5
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 8.0e-38 161.8 258 43.0
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.0e-37 161.4 266 44.4
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 3.0e-37 159.8 264 44.3
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 4.0e-37 159.5 305 40.0
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 5.2e-37 159.1 291 41.6
BcaC09g50700 Brassica carinata HOM05D007298 ORTHO05D009226 8.8e-37 158.3 96 83.3
BolC1t02157H Brassica oleracea HOM05D007298 ORTHO05D009226 8.8e-37 158.3 96 83.3
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 8.8e-37 158.3 259 42.5
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.0e-36 157.1 219 48.4
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.0e-36 157.1 219 48.4
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.0e-36 157.1 251 44.2
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-36 157.1 301 39.5
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 5.7e-36 155.6 293 42.0
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 9.8e-36 154.8 274 43.1
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 1.3e-35 154.5 317 41.0
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.3e-35 154.5 319 40.8
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 2.2e-35 153.7 241 43.2
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 2.2e-35 153.7 283 39.9
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 2.8e-35 153.3 293 41.0
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 4.9e-35 152.5 254 42.5
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 4.9e-35 152.5 318 37.4
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 6.3e-35 152.1 273 39.6
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 1.8e-34 150.6 250 43.2
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 2.4e-34 150.2 303 40.3
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 2.4e-34 150.2 279 40.1
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 1.6e-33 147.5 300 38.7
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 2.0e-33 147.1 243 45.7
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.7e-33 146.7 233 43.8
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.3e-32 144.4 282 40.8
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 2.3e-32 143.7 219 46.1
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 2.9e-32 143.3 236 43.6
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 5.0e-32 142.5 274 40.9
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 5.0e-32 142.5 292 39.0
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 8.6e-32 141.7 240 40.0
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 1.5e-31 141.0 260 42.7
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 1.9e-31 140.6 112 70.5
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 1.9e-31 140.6 112 70.5
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.9e-31 140.6 279 38.0
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 5.6e-31 139.0 305 37.7
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 2.8e-30 136.7 339 36.0
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 8.0e-30 135.2 241 40.2
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 2.3e-29 133.7 107 70.1
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 2.3e-29 133.7 222 42.8
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 3.0e-29 133.3 251 40.6
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 1.2e-28 131.3 238 43.3
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 2.0e-28 130.6 285 36.8
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 2.6e-28 130.2 234 41.5
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 4.4e-28 129.4 212 41.5
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 4.1e-26 122.9 298 38.6
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.5e-23 114.4 357 32.5
BolC3t13782H Brassica oleracea HOM05D007298 ORTHO05D009226 2.5e-23 113.6 63 84.1
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 1.6e-22 110.9 242 37.2
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 4.0e-21 106.3 203 37.4
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 4.0e-21 106.3 203 37.4
BraA01t01717Z Brassica rapa HOM05D007298 ORTHO05D009226 6.8e-21 105.5 64 82.8
A01p17630 Brassica napus HOM05D007298 ORTHO05D009226 5.8e-20 102.4 64 79.7
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 9.8e-20 101.7 227 37.4
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 4.6e-17 92.8 131 47.3
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 4.4e-12 76.3 118 40.7
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 9.8e-12 75.1 135 42.2


User provided reference genes

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