Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 6.0e-20 100.1 60 100.0
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 1.1e-18 95.9 60 95.0
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 6.2e-17 90.1 60 88.3
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 2.3e-16 88.2 60 86.7
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 3.1e-16 87.8 60 85.0
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 5.2e-16 87.0 60 85.0
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 86.7
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 6.8e-16 86.7 60 86.7
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 1.2e-15 85.9 60 83.3
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 1.5e-15 85.5 60 83.3
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.5e-15 85.5 60 83.3
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 2.6e-15 84.7 60 85.0
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 2.6e-15 84.7 60 85.0
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 2.6e-15 84.7 60 85.0
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 3.4e-15 84.3 60 83.3
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 7.5e-15 83.2 60 83.3
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 3.2e-13 77.8 61 82.0
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 9.2e-13 76.3 61 78.7
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 2.7e-12 74.7 61 80.3
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 3.5e-12 74.3 61 78.7
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 3.5e-12 74.3 60 70.0
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 4.6e-12 73.9 61 75.4
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 4.6e-12 73.9 61 75.4
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 4.6e-12 73.9 61 75.4
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 1.0e-11 72.8 61 73.8
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 1.3e-11 72.4 61 75.4
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 1.3e-11 72.4 61 75.4
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 1.7e-11 72.0 61 73.8
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 1.9e-10 68.6 61 73.8
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 2.5e-10 68.2 61 70.5
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 73.8
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 73.8
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 3.3e-10 67.8 61 73.8
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 3.3e-10 67.8 60 65.0
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 5.6e-10 67.0 61 72.1
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 5.6e-10 67.0 61 72.1
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 7.3e-10 66.6 60 66.7
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 7.3e-10 66.6 60 66.7
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 1.2e-09 65.9 60 66.7
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 1.6e-09 65.5 60 63.3
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 2.1e-09 65.1 60 63.3
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 3.6e-09 64.3 61 67.2
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 3.6e-09 64.3 61 63.9
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 3.6e-09 64.3 60 61.7
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 3.6e-09 64.3 61 65.6
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 4.7e-09 63.9 61 67.2
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 4.7e-09 63.9 60 63.3
THA.LOC109116609 Tarenaya hassleriana HOM05D004778 ORTHO05D005679 4.7e-09 63.9 62 74.2
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 6.2e-09 63.5 62 66.1
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 8.1e-09 63.2 62 64.5
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 8.1e-09 63.2 62 64.5
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 8.1e-09 63.2 58 60.3
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 1.1e-08 62.8 58 63.8
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 1.4e-08 62.4 60 60.0
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 1.4e-08 62.4 60 58.3
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 1.4e-08 62.4 61 68.9
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 1.4e-08 62.4 60 58.3
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 1.8e-08 62.0 60 61.7
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 2.3e-08 61.6 62 62.9
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 3.1e-08 61.2 60 60.0
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 3.1e-08 61.2 60 63.3
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 5.2e-08 60.5 60 58.3
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 6.8e-08 60.1 60 60.0
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 6.8e-08 60.1 57 66.7
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 6.8e-08 60.1 61 63.9
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 8.9e-08 59.7 61 63.9
Sp1g41010 Schrenkiella parvula HOM05D004778 ORTHO05D005679 8.9e-08 59.7 62 69.4
PSO339G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 1.2e-07 59.3 60 61.7
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 2.0e-07 58.5 61 62.3
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 2.0e-07 58.5 62 66.1
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 2.0e-07 58.5 62 66.1
CANSAT78G1478 Cannabis sativa HOM05D004778 ORTHO05D005679 2.0e-07 58.5 60 58.3
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 2.0e-07 58.5 60 60.0
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 2.0e-07 58.5 60 60.0
BolC6t36104H Brassica oleracea HOM05D004778 ORTHO05D005679 2.6e-07 58.2 62 64.5
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 2.6e-07 58.2 60 60.0
Aqoxy2G00513 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 3.4e-07 57.8 58 60.3
BcaB04g16964 Brassica carinata HOM05D004778 ORTHO05D005679 3.4e-07 57.8 59 64.4
BcaB05g23546 Brassica carinata HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 61.3
PSO339G2985 Papaver somniferum HOM05D004778 ORTHO05D005679 3.4e-07 57.8 57 59.6
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 4.4e-07 57.4 54 64.8
PSO384G3806 Papaver somniferum HOM05D004778 ORTHO05D005679 4.4e-07 57.4 57 59.6
BcaC08g44193 Brassica carinata HOM05D004778 ORTHO05D005679 5.8e-07 57.0 62 64.5
A05p17520 Brassica napus HOM05D004778 ORTHO05D005679 5.8e-07 57.0 62 64.5
BolC6t36791H Brassica oleracea HOM05D004778 ORTHO05D005679 5.8e-07 57.0 62 64.5
BraA05t20646Z Brassica rapa HOM05D004778 ORTHO05D005679 5.8e-07 57.0 62 64.5
PSO339G1550 Papaver somniferum HOM05D004778 ORTHO05D005679 5.8e-07 57.0 60 60.0
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 5.8e-07 57.0 61 59.0
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 5.8e-07 57.0 61 59.0
BcaB04g20986 Brassica carinata HOM05D004778 ORTHO05D005679 7.6e-07 56.6 63 63.5
A08p00710 Brassica napus HOM05D004778 ORTHO05D005679 7.6e-07 56.6 59 62.7
C01p51570 Brassica napus HOM05D004778 ORTHO05D005679 7.6e-07 56.6 63 63.5
BolC1t05100H Brassica oleracea HOM05D004778 ORTHO05D005679 7.6e-07 56.6 63 63.5
BraA08t32128Z Brassica rapa HOM05D004778 ORTHO05D005679 7.6e-07 56.6 59 62.7
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 7.6e-07 56.6 60 55.0
BcaC01g01515 Brassica carinata HOM05D004778 ORTHO05D005679 9.9e-07 56.2 59 62.7
A06p00250 Brassica napus HOM05D004778 ORTHO05D005679 9.9e-07 56.2 62 64.5
C03p92630 Brassica napus HOM05D004778 ORTHO05D005679 9.9e-07 56.2 59 62.7
BolC3t21577H Brassica oleracea HOM05D004778 ORTHO05D005679 9.9e-07 56.2 59 62.7
BraA06t23241Z Brassica rapa HOM05D004778 ORTHO05D005679 9.9e-07 56.2 62 64.5
BraA01t04050Z Brassica rapa HOM05D004778 ORTHO05D005679 1.3e-06 55.8 63 61.9
Carub.0003s1299 Capsella rubella HOM05D004778 ORTHO05D005679 1.7e-06 55.5 62 62.9
PSO339G3914 Papaver somniferum HOM05D004778 ORTHO05D005679 2.2e-06 55.1 61 57.4
Gohir.A13G099600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 4.9e-06 53.9 60 53.3
Sabra03G0164400 Salix brachista HOM05D004778 ORTHO05D005679 6.4e-06 53.5 53 54.7
Medtr7g085780 Medicago truncatula HOM05D004778 ORTHO05D005679 8.4e-06 53.1 61 60.7


User provided reference genes

Program Settings