Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.8e-66 254.6 121 100.0
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 1.5e-54 216.1 103 100.0
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.7e-54 214.2 117 88.9
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 3.5e-51 204.9 118 83.9
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 3.4e-46 188.3 115 76.5
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 9.1e-44 180.3 116 73.3
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 1.3e-42 176.4 116 73.3
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 3.8e-42 174.9 116 72.4
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 3.8e-42 174.9 116 73.3
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.1e-41 173.3 115 73.0
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 9.5e-41 170.2 116 70.7
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 9.5e-41 170.2 116 70.7
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 3.6e-40 168.3 116 70.7
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 4.5e-35 151.4 117 65.8
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 5.0e-26 121.3 116 53.4
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 1.5e-25 119.8 113 60.2
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.4e-23 113.2 114 55.3
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.4e-23 113.2 114 55.3
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.1e-23 112.1 114 55.3
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 6.8e-23 110.9 116 51.7
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.5e-22 109.8 116 50.9
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.0e-22 109.4 114 54.4
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.0e-22 109.4 114 54.4
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.0e-22 109.4 114 54.4
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.1e-20 103.6 114 49.1
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.6e-19 99.8 118 49.2
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.0e-19 99.4 114 47.4
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.9e-17 92.8 85 60.0
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.3e-17 92.0 83 57.8
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 4.3e-17 91.7 99 53.5
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 5.6e-17 91.3 107 51.4
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.3e-15 85.9 85 54.1
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 5.2e-15 84.7 114 43.0
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 5.2e-15 84.7 114 43.0
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 6.8e-15 84.3 114 43.0
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 8.9e-15 84.0 81 53.1
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.5e-14 83.2 79 57.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.0e-14 82.8 83 55.4
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.0e-14 82.8 83 55.4
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.4e-14 82.0 80 55.0
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 3.4e-14 82.0 90 47.8
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 4.4e-14 81.6 90 47.8
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 5.8e-14 81.3 83 54.2
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.3e-13 80.1 80 58.8
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 1.3e-13 80.1 82 53.7
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.7e-13 79.7 71 59.2
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 2.9e-13 79.0 79 54.4
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 3.7e-13 78.6 68 60.3
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 3.7e-13 78.6 85 50.6
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 4.9e-13 78.2 114 41.2
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 8.3e-13 77.4 114 42.1
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 8.3e-13 77.4 89 50.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.1e-12 77.0 102 49.0
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.4e-12 76.6 80 52.5
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 4.1e-12 75.1 82 50.0
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 5.4e-12 74.7 89 46.1
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 5.4e-12 74.7 87 49.4
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 7.1e-12 74.3 80 48.8
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 7.1e-12 74.3 121 38.0
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.6e-11 73.2 71 56.3
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 2.1e-11 72.8 82 51.2
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.7e-11 72.4 68 55.9
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 3.5e-11 72.0 94 46.8
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.6e-11 71.6 57 61.4
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.6e-11 71.6 57 61.4
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 4.6e-11 71.6 85 49.4
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 6.0e-11 71.2 59 59.3
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 7.8e-11 70.9 71 56.3
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 7.8e-11 70.9 66 57.6
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.0e-10 70.5 81 50.6
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.0e-10 70.5 66 54.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.0e-10 70.5 69 49.3
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.3e-10 70.1 83 53.0
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.7e-10 69.7 79 53.2
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.3e-10 69.3 83 47.0
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.3e-10 69.3 64 56.2
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 3.0e-10 68.9 94 41.5
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 3.0e-10 68.9 68 54.4
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 5.1e-10 68.2 70 57.1
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 5.1e-10 68.2 86 47.7
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 6.6e-10 67.8 81 46.9
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 1.1e-09 67.0 88 53.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 1.5e-09 66.6 65 50.8
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 4.3e-09 65.1 80 48.8
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 4.3e-09 65.1 101 44.6
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 7.3e-09 64.3 59 59.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 9.5e-09 63.9 81 45.7
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 1.6e-08 63.2 68 48.5
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.6e-08 63.2 68 52.9
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 3.6e-08 62.0 68 45.6
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 3.6e-08 62.0 69 52.2
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 3.6e-08 62.0 78 47.4
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 3.6e-08 62.0 61 57.4
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 6.2e-08 61.2 53 60.4
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 3.1e-07 58.9 62 50.0
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 4.0e-07 58.5 82 42.7
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 5.2e-07 58.2 74 47.3
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.8e-07 57.8 65 47.7
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 1.2e-06 57.0 95 36.8
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 7.6e-06 54.3 91 37.4


User provided reference genes

Program Settings