Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 8.8e-173 610.1 299 100.0
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.9e-144 515.0 290 87.6
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 3.6e-142 508.4 275 90.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 6.2e-142 507.7 289 86.2
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 4.6e-137 491.5 289 83.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.1e-135 486.9 289 82.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.6e-129 466.5 283 80.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.3e-128 462.6 293 79.9
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.2e-126 456.8 294 78.9
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 9.0e-125 450.7 294 77.6
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.6e-124 447.6 294 77.6
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-98 364.0 290 60.3
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 4.3e-95 352.1 289 58.8
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 9.7e-95 350.9 292 62.7
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.2e-94 349.7 290 59.3
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.8e-94 349.4 289 59.2
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 4.8e-94 348.6 289 58.8
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.1e-93 347.4 289 62.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.8e-93 346.7 278 59.7
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.4e-93 346.3 289 59.2
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.3e-93 345.1 256 63.7
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.5e-92 343.6 231 68.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.9e-92 341.7 231 68.0
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 5.9e-92 341.7 296 56.8
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 5.9e-92 341.7 238 68.9
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 7.7e-92 341.3 273 62.6
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.7e-92 341.3 264 64.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.7e-91 340.1 294 59.9
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.4e-90 337.0 294 56.8
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.5e-90 336.3 301 57.5
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.5e-90 336.3 289 57.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 3.2e-90 335.9 285 59.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.2e-89 334.0 283 61.1
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.2e-89 334.0 289 60.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-89 333.6 251 63.7
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.6e-89 333.6 289 59.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 2.7e-89 332.8 289 59.9
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.7e-89 332.8 291 59.5
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 4.6e-89 332.0 292 59.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.6e-89 332.0 285 60.4
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.4e-88 330.5 292 57.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.3e-88 329.7 289 58.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.0e-88 329.3 292 60.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.0e-88 329.3 289 57.8
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 3.9e-88 328.9 290 58.3
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.9e-88 328.9 294 56.1
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.1e-88 328.6 289 57.4
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.8e-88 327.8 289 57.4
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.1e-87 327.4 291 58.8
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.1e-87 327.4 305 56.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.5e-87 327.0 219 70.3
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.9e-87 326.6 292 56.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.5e-87 326.2 213 71.8
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 4.3e-87 325.5 277 59.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.8e-86 322.8 274 58.8
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.8e-86 322.8 296 57.1
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.8e-86 322.0 315 54.9
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.8e-86 322.0 254 61.0
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 6.3e-86 321.6 240 62.9
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-85 320.9 306 54.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-85 320.5 306 54.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-85 320.5 294 56.1
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.8e-85 320.1 289 56.1
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.8e-85 320.1 281 56.9
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.1e-85 319.3 220 66.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.1e-85 318.9 292 56.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.1e-85 318.9 254 60.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.9e-85 318.2 252 59.9
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 9.1e-85 317.8 295 55.9
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.5e-84 317.0 287 57.5
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 7.7e-84 314.7 224 64.3
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 7.7e-84 314.7 290 55.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.0e-83 314.3 322 53.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.0e-83 314.3 216 66.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.2e-83 313.2 356 50.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.2e-83 313.2 288 56.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.2e-83 313.2 269 56.5
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 5.0e-83 312.0 336 50.9
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 5.0e-83 312.0 289 54.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 6.5e-83 311.6 247 59.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 8.5e-83 311.2 289 53.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.1e-82 310.8 201 72.1
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.4e-82 310.5 255 58.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.4e-82 310.5 252 58.3
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.9e-82 310.1 216 66.7
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 3.2e-82 309.3 287 55.7
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.5e-82 308.5 283 56.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 7.2e-82 308.1 289 54.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.6e-81 307.0 269 56.1
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.0e-80 304.3 289 53.3
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.8e-80 303.5 284 56.3
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.8e-80 303.5 198 70.2
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 3.9e-80 302.4 217 66.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 3.3e-79 299.3 287 53.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.2e-78 296.6 249 58.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.7e-78 295.8 230 60.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 6.3e-78 295.0 212 63.7
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.8e-77 293.5 289 51.2
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.1e-77 292.7 289 55.0
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 5.3e-77 292.0 314 50.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.1e-77 291.2 217 64.1
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.2e-76 290.8 214 63.6
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 2.6e-76 289.7 246 59.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 2.6e-76 289.7 246 59.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 4.5e-76 288.9 316 51.3
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.3e-75 287.3 303 51.2
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.3e-75 287.3 196 68.9
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.8e-75 285.8 253 54.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-74 283.9 332 48.2
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.2e-74 281.6 292 53.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-73 280.8 227 58.6
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.1e-73 280.0 205 64.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.6e-73 279.3 292 52.7
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.4e-72 277.3 254 54.3
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.5e-68 262.7 328 44.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.0e-67 261.2 199 65.8
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.3e-67 260.8 298 49.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.5e-63 245.0 219 53.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 9.7e-63 244.6 212 53.3
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.4e-61 240.7 169 65.7
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.4e-61 240.0 190 61.1
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.7e-59 233.8 204 55.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.5e-58 229.9 212 56.1
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.2e-57 227.6 215 50.2
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.2e-57 227.6 215 50.2
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.5e-55 220.7 215 51.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.6e-52 210.7 160 63.8
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.9e-52 208.8 191 54.5
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.7e-52 208.4 179 57.0
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.3e-51 206.8 166 62.0
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.9e-48 194.9 178 54.5
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.5e-47 194.1 223 41.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.8e-46 189.9 120 71.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.9e-43 179.9 222 41.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.5e-42 177.6 117 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 2.0e-39 167.2 131 60.3
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 9.8e-39 164.9 107 68.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 3.7e-38 162.9 129 60.5
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 4.9e-38 162.5 260 38.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.6e-35 152.1 180 45.6
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.6e-35 151.8 108 63.9
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.3e-34 149.8 168 53.6
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 4.1e-29 132.9 142 50.7
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.1e-26 124.8 173 45.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.3e-22 111.3 169 44.4
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.5e-20 103.2 76 61.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 4.6e-20 102.8 106 46.2
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 6.0e-20 102.4 136 43.4
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.1e-18 98.2 156 37.8
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 8.9e-16 88.6 76 63.2
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.0e-11 75.1 38 89.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 5.6e-10 69.3 36 80.6
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-09 68.2 58 51.7
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.1e-08 65.1 118 41.5
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 5.3e-08 62.8 197 28.9
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.8e-06 56.6 40 57.5


User provided reference genes

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