Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 3.2e-299 1031.2 587 100.0
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.4e-270 935.3 589 91.3
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.3e-247 859.8 593 85.7
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 4.8e-247 857.8 593 85.3
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.5e-243 845.5 593 83.5
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.4e-235 819.7 592 82.1
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.3e-233 813.1 593 76.2
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-227 793.1 593 77.9
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.2e-226 790.0 593 77.9
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 6.7e-225 784.3 591 75.3
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 9.7e-224 780.4 595 79.5
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-222 776.5 596 76.5
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.0e-220 770.4 595 79.0
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.7e-220 769.6 596 75.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 5.0e-212 741.5 591 76.0
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 6.4e-175 618.2 590 66.3
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.3e-167 594.0 614 64.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 9.5e-163 577.8 608 63.8
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 7.6e-120 435.3 694 43.4
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.9e-111 406.8 689 43.5
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 8.5e-111 405.2 701 45.8
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 8.5e-111 405.2 680 43.2
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.2e-109 401.4 667 40.9
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.1e-109 400.6 653 42.1
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.6e-109 399.4 690 42.5
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.4e-108 397.9 675 43.3
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-107 394.8 652 41.3
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.0e-107 394.0 672 42.3
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 3.3e-107 393.3 680 40.1
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 7.4e-107 392.1 663 41.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-106 390.6 659 42.0
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.2e-106 390.6 680 42.2
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 3.7e-106 389.8 688 40.1
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 7.7e-104 382.1 675 38.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 7.7e-104 382.1 696 39.8
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 2.9e-103 380.2 688 40.4
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-102 378.3 667 42.7
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.1e-102 378.3 683 40.0
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 3.2e-102 376.7 670 39.9
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 5.5e-102 375.9 691 39.8
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 7.2e-102 375.6 702 39.2
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 9.4e-102 375.2 663 40.0
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.2e-101 374.8 662 40.0
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-101 374.4 675 38.5
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.0e-100 371.7 674 39.9
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.4e-100 371.3 623 41.6
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.4e-100 371.3 610 43.0
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.3e-100 370.5 654 39.3
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 3.9e-100 369.8 686 40.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.8e-100 368.6 676 39.3
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.5e-99 367.9 673 38.8
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.4e-99 366.3 673 38.5
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 4.4e-99 366.3 678 39.8
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 5.7e-99 365.9 693 41.1
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.7e-98 364.4 693 41.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.8e-98 363.6 697 41.0
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.3e-98 362.5 663 40.7
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 2.4e-97 360.5 688 39.2
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.0e-96 357.5 679 42.1
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.0e-95 355.1 681 38.2
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.9e-95 353.6 661 38.1
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.8e-95 353.2 666 41.4
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 3.8e-95 353.2 688 36.6
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 4.2e-94 349.7 666 37.7
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 5.5e-94 349.4 674 39.3
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 5.5e-94 349.4 672 39.1
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 7.2e-94 349.0 684 37.4
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 1.6e-93 347.8 678 38.2
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.4e-92 344.7 665 36.7
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 6.7e-92 342.4 667 37.5
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-91 341.3 674 39.6
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.5e-91 341.3 684 38.5
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.5e-91 341.3 677 37.4
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.3e-90 338.2 672 43.9
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.7e-90 337.8 674 39.5
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 3.7e-90 336.7 674 38.7
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.8e-89 334.3 680 38.4
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 2.4e-89 334.0 601 39.4
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.0e-89 332.4 674 39.3
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 7.0e-89 332.4 632 37.5
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 9.1e-89 332.0 767 34.3
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.0e-88 330.9 595 44.2
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.0e-88 330.9 668 39.2
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 7.7e-88 328.9 625 40.0
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.7e-87 327.8 659 39.0
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 3.8e-87 326.6 673 38.2
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.9e-86 324.3 671 40.5
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.5e-86 323.9 664 40.8
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.2e-85 321.6 583 38.3
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.2e-85 321.6 682 36.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.1e-85 320.9 666 39.0
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.1e-85 320.9 668 36.2
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.6e-85 320.1 753 36.7
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.6e-85 320.1 683 37.5
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.7e-85 319.7 666 38.6
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 8.0e-85 318.9 672 39.1
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.4e-84 318.2 670 38.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.4e-84 318.2 684 35.4
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.8e-84 317.8 660 35.9
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 3.0e-84 317.0 797 34.0
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 4.8e-82 309.7 745 34.9
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.8e-81 307.8 669 36.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 4.1e-81 306.6 686 34.5
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.2e-80 305.1 684 35.8
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.7e-80 303.9 666 35.0
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.9e-80 302.8 653 38.7
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.0e-79 299.7 517 42.4
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.1e-78 298.5 701 36.2
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 3.2e-78 297.0 681 36.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.2e-77 295.0 745 33.3
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.2e-77 295.0 630 35.1
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 3.6e-77 293.5 475 45.9
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.0e-76 292.0 713 34.5
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 3.0e-76 290.4 680 35.4
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 8.8e-76 288.9 680 35.3
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.2e-75 288.5 664 37.7
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.5e-75 288.1 678 32.6
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 4.4e-75 286.6 659 34.6
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.5e-75 285.8 684 35.1
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.3e-74 285.0 657 35.6
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 3.7e-74 283.5 746 33.5
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.4e-73 280.8 247 57.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.2e-72 278.5 651 33.6
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 7.7e-72 275.8 578 40.8
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.0e-71 275.4 640 37.5
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 8.6e-71 272.3 328 46.0
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.3e-70 270.4 549 36.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 4.3e-70 270.0 593 35.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 9.5e-70 268.9 633 36.3
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.2e-69 268.5 606 36.6
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.6e-69 268.1 695 36.0
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.6e-69 268.1 198 66.2
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 2.8e-69 267.3 519 36.8
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.5e-67 261.5 465 38.1
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 9.2e-65 252.3 530 35.5
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 3.5e-64 250.4 244 52.0
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.3e-63 247.7 256 46.9
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.5e-62 245.0 336 41.1
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.3e-62 243.4 641 32.0
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.4e-60 238.4 627 31.9
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 6.8e-60 236.1 203 58.6
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.9e-58 229.9 189 59.3
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 4.1e-57 226.9 541 33.6
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.0e-55 222.2 247 49.4
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 3.9e-55 220.3 220 52.7
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 4.3e-54 216.9 245 45.7
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 4.3e-54 216.9 598 33.3
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 4.7e-53 213.4 237 48.1
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.2e-48 198.7 204 49.0
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 1.6e-48 198.4 143 74.1
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.0e-47 195.7 200 48.0
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-44 185.7 644 30.3
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.4e-42 176.4 633 31.9
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.0e-39 169.1 206 47.1
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 8.6e-39 166.0 136 62.5
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 7.6e-35 152.9 126 58.7
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.4e-28 131.3 200 41.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.8e-27 126.7 113 55.8
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 7.6e-27 126.3 158 47.5
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 9.3e-25 119.4 392 29.3
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 6.7e-23 113.2 288 28.1
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.6e-22 110.2 82 65.9
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 8.4e-18 96.3 375 29.6
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 4.2e-17 94.0 464 28.0
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 2.8e-13 81.3 64 62.5
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 5.3e-12 77.0 96 45.8
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.0e-08 63.5 368 27.2
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.3e-07 62.4 343 25.1
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.0e-07 61.2 140 32.1
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.0e-07 61.2 61 47.5
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 3.3e-06 57.8 343 28.3


User provided reference genes

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