Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 5.8e-248 860.5 460 100.0
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.1e-157 559.7 462 72.7
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.8e-132 474.9 483 60.7
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 6.6e-127 458.4 472 60.0
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-111 406.4 469 55.9
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-108 397.5 469 55.2
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 1.5e-107 394.0 403 63.3
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 7.6e-107 391.7 468 54.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 7.9e-104 381.7 474 53.8
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 7.9e-104 381.7 474 53.8
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.2e-48 198.4 455 37.6
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.8e-47 194.5 524 34.7
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-44 185.3 513 35.7
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 5.4e-44 183.0 513 35.5
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.6e-40 170.2 486 34.2
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 8.9e-39 165.6 449 38.5
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.5e-38 164.9 523 33.8
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.2e-37 161.0 489 34.6
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 6.3e-37 159.5 520 33.8
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.8e-36 157.9 469 32.6
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 3.1e-36 157.1 497 33.6
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.3e-33 146.0 456 35.1
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 3.0e-31 140.6 414 36.2
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.3e-23 114.4 301 35.9
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 2.0e-22 111.3 400 32.2
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 2.6e-22 110.9 260 39.6
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 9.8e-22 109.0 329 34.7
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.3e-21 108.6 312 33.0
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.7e-21 108.2 283 33.9
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.2e-21 107.8 330 34.5
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.4e-20 105.1 324 33.6
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 7.0e-20 102.8 447 29.3
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 9.2e-20 102.4 319 34.8
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.7e-19 100.9 311 33.8
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 4.6e-19 100.1 335 31.6
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 7.8e-19 99.4 623 26.6
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 7.8e-19 99.4 322 32.6
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 2.3e-18 97.8 448 29.7
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.3e-18 97.8 491 27.3
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 3.9e-18 97.1 266 36.8
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.6e-18 96.3 270 33.7
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 6.6e-18 96.3 394 30.7
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 8.6e-18 95.9 382 30.9
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 8.6e-18 95.9 273 33.3
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 1.1e-17 95.5 522 27.2
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.1e-17 95.5 376 30.3
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 1.9e-17 94.7 335 34.3
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 1.9e-17 94.7 260 31.5
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 3.3e-17 94.0 218 38.1
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.3e-17 93.6 386 29.5
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 4.3e-17 93.6 432 28.0
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 4.3e-17 93.6 259 33.6
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 5.6e-17 93.2 285 31.2
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 5.6e-17 93.2 301 33.2
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 7.3e-17 92.8 424 30.4
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 9.5e-17 92.4 289 31.8
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 9.5e-17 92.4 302 30.1
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.2e-16 92.0 293 35.5
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 2.1e-16 91.3 428 30.8
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.1e-16 91.3 384 28.6
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 2.1e-16 91.3 263 34.2
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 2.8e-16 90.9 271 32.8
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.8e-16 90.9 348 30.7
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 3.6e-16 90.5 275 33.1
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.6e-16 90.5 419 29.8
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 3.6e-16 90.5 412 30.6
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 4.7e-16 90.1 322 31.1
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 4.7e-16 90.1 322 31.1
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 4.7e-16 90.1 285 33.0
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 8.1e-16 89.4 273 35.2
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.1e-15 89.0 263 33.1
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.1e-15 89.0 478 27.6
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 1.8e-15 88.2 226 36.7
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 1.8e-15 88.2 444 27.3
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 3.1e-15 87.4 375 28.5
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 3.1e-15 87.4 431 28.3
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 3.1e-15 87.4 284 31.7
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 5.2e-15 86.7 354 30.5
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.2e-15 86.7 382 29.8
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 6.8e-15 86.3 289 31.5
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 8.9e-15 85.9 507 28.4
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-14 85.5 443 27.3
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-14 85.5 443 27.3
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 1.2e-14 85.5 484 27.3
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.5e-14 85.1 340 30.9
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.6e-14 84.3 447 29.5
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.4e-14 84.0 419 29.1
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.2e-13 81.3 406 28.3
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.2e-13 81.3 335 28.4
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.2e-13 81.3 325 30.2
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.2e-13 81.3 522 26.8
BcaC09g50776 Brassica carinata HOM05D003765 ORTHO05D023707 2.9e-13 80.9 78 57.7
BolC1t02024H Brassica oleracea HOM05D003765 ORTHO05D023707 2.9e-13 80.9 78 57.7
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.9e-13 80.9 341 30.5
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 2.9e-13 80.9 551 28.5
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 3.7e-13 80.5 396 29.3
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 3.7e-13 80.5 352 29.8
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 4.9e-13 80.1 362 30.4
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 4.9e-13 80.1 286 31.8
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 8.3e-13 79.3 363 30.3
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 8.3e-13 79.3 384 29.2
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.1e-12 79.0 163 39.9
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.1e-12 79.0 369 26.3
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.4e-12 78.6 341 29.0
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.4e-12 78.6 419 28.6
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.4e-12 78.6 260 32.3
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.4e-12 77.8 491 26.1
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 2.4e-12 77.8 495 27.7
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.2e-12 77.4 492 26.8
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 3.2e-12 77.4 258 29.8
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 4.1e-12 77.0 351 29.9
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.6e-11 75.1 299 28.4
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.1e-11 74.7 419 26.5
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.1e-11 74.7 340 28.5
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 2.7e-11 74.3 482 26.1
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 2.7e-11 74.3 288 30.6
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.5e-11 73.9 511 26.2
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 4.6e-11 73.6 234 31.2
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 4.6e-11 73.6 235 31.5
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 6.0e-11 73.2 299 29.4
CARHR232840 Cardamine hirsuta HOM05D003765 ORTHO05D023707 6.0e-11 73.2 63 61.9
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 7.8e-11 72.8 409 29.8
C01p20970 Brassica napus HOM05D003765 ORTHO05D023707 1.0e-10 72.4 109 45.9
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.0e-10 72.4 352 28.4
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.3e-10 72.0 475 28.2
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.3e-10 71.2 364 28.6
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.9e-10 70.5 361 28.8
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 5.1e-10 70.1 318 27.7
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 5.1e-10 70.1 430 28.4
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.6e-10 69.3 197 33.0
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.1e-09 68.9 195 31.8
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.5e-09 68.6 327 29.7
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.5e-09 67.8 279 26.5
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.5e-09 67.8 186 35.5
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 4.3e-09 67.0 291 28.2
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 4.3e-09 67.0 236 30.1
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 5.6e-09 66.6 394 28.7
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.3e-09 66.2 312 29.5
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 9.5e-09 65.9 341 28.2
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.6e-08 65.1 158 37.3
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 2.1e-08 64.7 357 27.5
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 2.8e-08 64.3 265 26.8
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.7e-08 63.5 234 32.5
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-07 62.4 163 36.2
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-07 62.0 245 29.4
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 1.8e-07 61.6 263 30.4
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 1.8e-07 61.6 262 30.2
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.1e-07 60.8 271 28.8
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 3.1e-07 60.8 287 28.2
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 6.8e-07 59.7 495 25.1
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 6.8e-07 59.7 394 26.4
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 8.9e-07 59.3 453 25.2
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 2.0e-06 58.2 396 24.5
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.6e-06 57.8 322 27.0
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 9.9e-06 55.8 479 24.8


User provided reference genes

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