Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 6.2e-134 480.7 230 100.0
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 3.0e-120 435.3 230 90.4
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 3.8e-99 365.2 215 80.5
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 2.5e-82 309.3 218 69.3
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.8e-77 293.1 218 65.6
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.4e-77 292.7 218 65.6
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 9.1e-77 290.8 216 65.7
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 4.5e-76 288.5 215 67.9
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 1.7e-75 286.6 218 64.7
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 3.8e-75 285.4 218 63.3
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 1.5e-42 177.2 171 50.9
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 8.4e-30 134.8 175 42.9
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.1e-29 134.4 175 42.9
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 4.6e-28 129.0 166 41.6
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.5e-26 124.0 175 38.3
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.9e-26 123.6 190 37.4
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.6e-26 122.1 199 35.2
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 5.6e-26 122.1 162 38.9
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 5.6e-26 122.1 174 36.2
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 5.6e-26 122.1 181 37.6
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 9.6e-26 121.3 197 36.0
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 9.6e-26 121.3 214 36.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.3e-25 120.9 170 38.2
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.6e-25 120.6 167 38.3
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.6e-25 120.6 167 38.3
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.1e-25 120.2 160 41.2
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 2.8e-25 119.8 172 39.0
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 3.6e-25 119.4 163 38.7
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 3.6e-25 119.4 167 40.1
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 6.2e-25 118.6 166 38.6
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.2e-25 118.6 168 39.9
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.2e-25 118.6 168 39.9
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 8.1e-25 118.2 160 40.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.1e-24 117.9 164 40.2
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.8e-24 117.1 164 39.6
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.4e-24 116.7 188 36.2
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.1e-24 116.3 163 37.4
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.0e-24 115.9 161 37.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 5.3e-24 115.5 168 38.1
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 5.3e-24 115.5 194 35.6
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 6.9e-24 115.2 162 37.7
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 6.9e-24 115.2 176 36.9
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 9.0e-24 114.8 167 38.3
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 9.0e-24 114.8 175 37.7
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.2e-23 114.4 163 41.7
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.2e-23 114.4 176 37.5
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.2e-23 114.4 164 35.4
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.0e-23 113.6 175 37.7
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 2.0e-23 113.6 190 35.3
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 2.0e-23 113.6 180 36.1
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 2.0e-23 113.6 205 32.7
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.6e-23 113.2 162 35.8
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 3.4e-23 112.8 212 33.0
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 4.4e-23 112.5 185 34.6
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 4.4e-23 112.5 154 39.6
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 9.9e-23 111.3 173 37.0
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.3e-22 110.9 170 36.5
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.3e-22 110.9 169 36.1
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.3e-22 110.9 168 33.3
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.7e-22 110.5 155 38.1
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.7e-22 110.5 155 38.1
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.7e-22 110.5 181 34.3
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.7e-22 110.5 171 36.3
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.2e-22 110.2 168 33.3
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 2.9e-22 109.8 185 34.6
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.8e-22 109.4 169 36.1
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 4.9e-22 109.0 176 38.1
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 4.9e-22 109.0 169 37.9
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 4.9e-22 109.0 169 37.9
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 4.9e-22 109.0 188 33.0
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 6.4e-22 108.6 168 35.7
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 8.4e-22 108.2 175 35.4
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 8.4e-22 108.2 168 33.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 1.1e-21 107.8 181 34.3
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.1e-21 107.8 186 32.8
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.4e-21 107.5 167 35.9
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 1.9e-21 107.1 169 36.7
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 9.3e-21 104.8 166 35.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-20 104.4 173 35.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.2e-20 104.4 177 34.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.6e-20 104.0 165 37.6
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 2.1e-20 103.6 166 34.9
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.1e-20 103.6 177 33.9
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 2.7e-20 103.2 169 34.3
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 2.7e-20 103.2 186 31.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 3.5e-20 102.8 173 35.3
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 3.5e-20 102.8 185 32.4
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 4.6e-20 102.4 186 31.2
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.6e-20 102.4 173 31.8
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.3e-19 100.1 165 36.4
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 3.9e-19 99.4 163 33.7
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 5.1e-19 99.0 175 36.0
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 5.1e-19 99.0 142 37.3
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 5.1e-19 99.0 140 39.3
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 6.6e-19 98.6 168 33.9
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 8.7e-19 98.2 179 35.8
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 8.7e-19 98.2 163 31.9
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-18 97.1 174 32.8
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-18 97.1 171 36.3
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 2.5e-18 96.7 165 32.1
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.5e-18 96.7 165 35.8
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-18 96.7 168 33.9
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 4.3e-18 95.9 168 33.9
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 4.3e-18 95.9 174 32.2
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-18 95.5 168 33.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 2.1e-17 93.6 167 33.5
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 2.8e-17 93.2 176 33.5
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 8.1e-17 91.7 163 31.3
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 8.1e-17 91.7 169 33.7
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 1.1e-16 91.3 157 37.6
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-16 90.9 143 35.0
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 2.4e-16 90.1 143 33.6
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 3.1e-16 89.7 174 33.3
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.0e-16 89.4 164 33.5
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 4.0e-16 89.4 149 32.9
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 5.3e-16 89.0 175 32.0
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.9e-16 88.6 170 31.8
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.9e-16 88.6 174 31.0
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-15 87.8 175 32.0
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-15 87.8 175 32.0
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-15 87.8 169 33.1
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 1.5e-15 87.4 158 39.2
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.5e-15 87.4 166 36.7
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.5e-15 87.4 184 29.3
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 2.6e-15 86.7 99 47.5
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 3.4e-15 86.3 171 28.1
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 4.5e-15 85.9 169 30.8
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.3e-14 84.3 154 34.4
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-14 84.0 175 32.0
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.2e-14 83.6 124 37.1
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 2.2e-14 83.6 171 32.2
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 3.8e-14 82.8 168 32.7
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.4e-14 82.0 212 26.9
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 3.2e-13 79.7 117 40.2
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 4.2e-13 79.3 187 27.8
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 5.4e-13 79.0 113 36.3
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 5.4e-13 79.0 99 43.4
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.2e-12 77.8 96 41.7
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 1.2e-12 77.8 167 29.3
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 4.6e-12 75.9 169 31.4
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 7.9e-12 75.1 165 30.3
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 2.3e-11 73.6 98 37.8
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.3e-11 73.6 184 25.0
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 3.9e-11 72.8 172 31.4
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.9e-11 72.8 173 31.8
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.5e-10 70.9 121 35.5
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 2.5e-10 70.1 125 33.6
Pp3c24_6860 Physcomitrium patens HOM05D003575 ORTHO05D003587 4.3e-10 69.3 150 29.3
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 4.8e-09 65.9 140 30.0
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 4.8e-09 65.9 103 35.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 6.2e-09 65.5 100 40.0
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.4e-08 64.3 110 33.6
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 1.7e-06 57.4 192 26.6


User provided reference genes

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