Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 8.2e-249 863.2 422 100.0
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.5e-221 771.9 424 90.1
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 7.3e-173 610.9 407 76.4
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.7e-161 573.2 426 68.5
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.4e-160 570.1 418 71.5
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 2.9e-145 519.2 427 65.8
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 5.1e-142 508.4 440 63.0
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 6.7e-134 481.5 433 60.7
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 6.7e-134 481.5 433 61.0
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 8.2e-132 474.6 441 60.8
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.2e-130 470.7 442 60.9
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 5.5e-128 461.8 434 59.9
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 9.7e-109 397.9 426 50.0
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 4.8e-108 395.6 432 50.7
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.6e-106 390.6 427 51.3
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 5.9e-106 388.7 429 50.1
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.7e-105 387.1 438 48.2
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 5.5e-104 382.1 441 48.5
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 5.5e-104 382.1 436 47.9
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 7.2e-104 381.7 426 50.9
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 9.4e-104 381.3 455 50.3
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 1.2e-103 380.9 447 47.2
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.2e-103 380.9 424 50.0
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.6e-103 380.6 424 51.7
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.7e-103 379.8 433 48.5
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 2.7e-103 379.8 434 47.7
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 3.6e-103 379.4 423 49.2
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 6.1e-103 378.6 437 48.3
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 8.0e-103 378.3 425 51.1
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.4e-102 377.5 431 48.7
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.3e-102 376.7 410 50.7
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 2.3e-102 376.7 420 49.5
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 6.7e-102 375.2 429 47.3
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 1.2e-101 374.4 437 48.7
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 7.5e-101 371.7 435 48.0
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 2.4e-99 366.7 422 48.1
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.7e-97 360.5 465 46.7
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 2.2e-97 360.1 420 48.6
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 5.0e-97 359.0 427 47.3
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 6.5e-97 358.6 429 46.9
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 6.5e-97 358.6 420 50.2
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.2e-96 356.3 422 47.2
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 2.7e-95 353.2 421 47.5
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 2.7e-95 353.2 421 47.5
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.4e-94 350.9 423 47.0
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 3.0e-94 349.7 433 47.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 3.0e-94 349.7 423 47.3
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.3e-92 344.4 416 47.1
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 2.2e-92 343.6 227 74.4
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.1e-91 341.3 424 48.3
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 3.1e-91 339.7 432 45.6
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 7.0e-91 338.6 423 46.6
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 1.2e-90 337.8 415 46.0
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 2.0e-90 337.0 392 48.0
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 7.7e-90 335.1 438 45.2
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 1.7e-89 334.0 419 45.8
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 6.6e-89 332.0 465 42.2
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.1e-87 327.0 433 44.8
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 8.0e-87 325.1 446 43.9
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 3.0e-86 323.2 426 44.1
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 8.9e-86 321.6 445 43.4
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.6e-85 320.1 427 44.7
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.4e-85 319.7 432 45.4
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.4e-83 314.3 416 44.7
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.4e-83 314.3 418 43.5
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.4e-83 314.3 428 44.9
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 2.4e-83 313.5 430 45.3
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 1.2e-82 311.2 420 42.6
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.2e-82 311.2 421 42.8
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 5.9e-82 308.9 376 46.3
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 8.6e-81 305.1 432 43.8
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 9.5e-80 301.6 427 41.5
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.8e-78 297.4 211 73.5
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.3e-78 297.0 403 46.4
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 3.0e-78 296.6 421 43.0
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 6.8e-78 295.4 428 43.5
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 8.9e-78 295.0 413 41.2
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.5e-77 294.3 160 88.8
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 2.0e-77 293.9 407 44.0
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 5.8e-77 292.4 437 42.8
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 6.4e-76 288.9 457 39.4
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 5.4e-75 285.8 413 42.9
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 2.5e-72 276.9 418 39.7
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 2.2e-68 263.8 425 39.1
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.7e-68 263.1 402 41.0
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 3.0e-65 253.4 528 35.6
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 4.0e-62 243.0 436 38.3
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 8.9e-62 241.9 225 55.1
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.5e-61 241.1 253 49.0
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 8.3e-60 235.3 423 37.8
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 1.0e-57 228.4 217 54.4
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.3e-57 228.0 448 32.4
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 2.3e-57 227.3 319 44.5
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 7.3e-56 222.2 260 48.1
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.4e-54 218.0 209 52.2
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 1.9e-48 197.6 316 43.4
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.5e-48 197.2 327 43.4
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 3.3e-48 196.8 415 34.0
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 9.6e-48 195.3 178 55.6
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.5e-45 188.0 173 54.9
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.1e-43 181.8 171 52.0
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 4.2e-43 179.9 413 31.5
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.1e-40 171.8 485 28.0
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 3.3e-40 170.2 186 46.2
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.4e-38 164.9 151 57.0
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.4e-38 164.1 125 62.4
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.1e-38 163.7 151 56.3
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 5.3e-38 162.9 296 39.2
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 5.8e-37 159.5 160 55.6
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.9e-36 156.4 200 43.0
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.9e-36 156.4 200 43.0
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 4.9e-36 156.4 184 51.1
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 8.4e-36 155.6 180 48.9
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.4e-35 154.8 126 55.6
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 2.4e-35 154.1 164 50.0
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 4.2e-35 153.3 261 42.5
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.6e-34 151.4 170 48.2
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.4e-30 138.3 293 37.2
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 5.8e-29 132.9 132 55.3
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 2.9e-28 130.6 117 47.9
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.1e-27 125.9 133 41.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.5e-24 117.5 337 28.8
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.8e-23 114.0 155 45.2
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 6.2e-23 112.8 128 38.3
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 6.2e-23 112.8 179 41.3
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.2e-21 108.6 146 42.5
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 4.5e-21 106.7 104 54.8
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.0e-18 96.3 89 51.7
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.9e-17 93.6 249 35.3
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.5e-16 91.7 122 44.3
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 8.5e-12 75.9 211 30.8
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 2.3e-09 67.8 76 44.7
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.0e-08 64.7 72 44.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.5e-08 64.3 164 34.1


User provided reference genes

Program Settings