Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 7.2e-162 573.9 309 100.0
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 2.7e-148 528.9 309 91.9
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 1.0e-139 500.4 309 87.4
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 3.7e-134 481.9 314 83.4
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.1e-130 470.3 311 81.7
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 7.3e-130 467.6 311 81.0
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 7.3e-130 467.6 311 81.0
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 2.1e-129 466.1 311 80.7
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 4.7e-129 464.9 313 80.8
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 6.2e-129 464.5 311 81.7
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 1.8e-128 463.0 311 81.0
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 3.6e-113 412.1 307 73.3
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 8.4e-110 401.0 310 71.6
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 9.4e-85 317.8 275 65.1
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.8e-80 303.5 310 58.4
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 9.1e-80 301.2 284 62.0
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 5.9e-79 298.5 279 58.1
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 1.0e-78 297.7 251 65.3
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 1.0e-78 297.7 251 65.3
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.2e-78 296.6 251 65.3
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 8.5e-78 294.7 183 85.8
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 8.5e-78 294.7 307 55.0
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 3.2e-77 292.7 304 54.9
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 5.5e-77 292.0 252 64.3
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 5.5e-77 292.0 256 62.9
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 3.6e-76 289.3 306 54.6
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 3.6e-76 289.3 294 57.8
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 4.7e-76 288.9 309 54.0
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 6.1e-76 288.5 250 63.2
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 6.1e-76 288.5 247 61.5
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 1.4e-75 287.3 256 60.5
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 8.8e-75 284.6 309 53.7
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 3.3e-74 282.7 259 59.1
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 3.3e-74 282.7 255 60.4
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 4.1e-72 275.8 239 64.9
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 4.1e-72 275.8 268 56.0
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 1.6e-71 273.9 256 58.2
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 2.0e-71 273.5 238 61.8
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 5.9e-71 271.9 304 52.0
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 7.7e-71 271.6 292 53.1
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 7.7e-71 271.6 307 52.1
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.3e-70 270.8 267 56.6
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 1.7e-70 270.4 295 54.6
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 8.5e-70 268.1 282 55.7
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 8.5e-70 268.1 306 51.3
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.5e-69 267.3 267 58.4
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 1.9e-69 266.9 287 52.3
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 4.2e-69 265.8 258 56.6
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 4.2e-69 265.8 306 52.9
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 4.2e-69 265.8 249 59.8
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 7.2e-69 265.0 301 54.8
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 9.4e-69 264.6 250 62.0
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.2e-68 264.2 289 54.3
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 1.2e-68 264.2 301 51.5
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 2.1e-68 263.5 296 51.4
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 3.6e-68 262.7 310 52.3
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 4.7e-68 262.3 295 55.6
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 6.1e-68 261.9 264 57.2
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 8.0e-68 261.5 267 56.2
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 8.0e-68 261.5 267 56.2
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.4e-67 260.8 308 50.6
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 2.3e-67 260.0 245 61.2
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 3.0e-67 259.6 268 54.1
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 5.2e-67 258.8 256 56.2
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 8.8e-67 258.1 244 58.2
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 8.8e-67 258.1 238 59.7
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 7.5e-66 255.0 249 56.6
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 7.5e-66 255.0 256 55.9
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 7.5e-66 255.0 262 55.3
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 1.7e-65 253.8 279 53.0
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 2.8e-65 253.1 250 56.8
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 3.7e-65 252.7 241 57.3
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 8.2e-65 251.5 252 56.0
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 3.1e-64 249.6 278 51.4
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 1.2e-63 247.7 250 54.8
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 2.7e-63 246.5 298 52.7
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 5.9e-63 245.4 284 50.0
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 1.7e-62 243.8 267 53.6
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 7.2e-61 238.4 300 51.0
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 9.4e-61 238.0 264 51.9
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 1.2e-60 237.7 238 52.9
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 4.7e-60 235.7 254 53.5
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 4.7e-60 235.7 249 53.8
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 8.0e-60 235.0 266 52.3
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 3.0e-59 233.0 248 52.4
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 6.8e-59 231.9 307 48.5
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 1.5e-58 230.7 250 53.2
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 1.4e-56 224.2 302 46.4
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 5.4e-56 222.2 320 45.6
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 8.5e-54 214.9 267 51.7
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 1.9e-53 213.8 249 48.6
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 4.2e-53 212.6 252 51.2
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 1.2e-52 211.1 271 50.2
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 3.6e-52 209.5 262 48.5
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.3e-51 206.8 262 48.1
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 4.4e-50 202.6 255 48.2
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 8.3e-49 198.4 251 47.4
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 4.3e-45 186.0 276 46.7
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 2.1e-44 183.7 267 43.8
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 8.9e-43 178.3 221 53.4
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 8.3e-41 171.8 136 70.6
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 1.6e-39 167.5 179 50.3
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 2.5e-37 160.2 150 64.7
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 2.1e-36 157.1 242 41.3
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.8e-35 154.1 143 61.5
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 3.7e-33 146.4 217 41.9
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 2.0e-31 140.6 250 37.6
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 1.0e-30 138.3 266 38.0
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 6.6e-30 135.6 278 35.6
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 7.3e-29 132.1 203 41.9
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 1.4e-24 117.9 116 58.6
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 3.5e-23 113.2 265 33.6
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 4.6e-23 112.8 139 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 5.6e-21 105.9 306 30.1
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 9.5e-21 105.1 167 46.1
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 3.6e-20 103.2 239 35.1
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 1.4e-19 101.3 232 34.1
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 1.3e-14 84.7 136 42.6
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 3.1e-11 73.6 253 30.0
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.8e-09 66.6 58 55.2
PRCOL_00003382 Prasinoderma coloniale HOM05D006904 ORTHO05D008439 5.1e-06 56.2 149 32.9


User provided reference genes

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