Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.4e-90 336.3 168 100.0
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.1e-86 322.4 168 94.0
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.1e-79 297.4 168 86.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.2e-78 296.6 167 88.0
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.0e-72 276.9 166 77.7
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-72 276.6 166 77.7
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.3e-72 276.6 166 77.7
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.3e-72 276.6 166 77.7
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 4.9e-72 274.6 166 77.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 6.5e-72 274.2 166 80.1
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 6.5e-72 274.2 166 80.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.9e-71 272.7 167 76.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 2.5e-71 272.3 166 80.1
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 4.2e-71 271.6 166 79.5
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.5e-71 271.2 166 80.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.7e-70 268.9 166 78.9
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 4.6e-70 268.1 166 75.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.1e-68 263.5 166 74.7
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.4e-66 256.5 166 71.7
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.3e-59 231.1 165 66.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.5e-55 219.2 167 62.3
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 7.9e-54 214.2 166 60.2
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.4e-52 207.6 166 57.2
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.7e-51 206.5 166 57.8
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.2e-51 206.1 166 57.2
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.8e-51 205.7 166 56.0
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.8e-51 204.9 166 57.2
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 4.8e-51 204.9 166 57.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 6.3e-51 204.5 166 59.6
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.2e-51 204.1 166 56.0
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.4e-50 203.4 166 56.0
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.4e-50 203.4 166 57.8
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-50 203.4 166 56.6
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.4e-50 203.4 166 57.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.4e-50 202.6 166 55.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.4e-50 202.6 167 57.5
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.1e-50 202.2 166 58.4
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.1e-50 201.8 166 55.4
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 4.1e-50 201.8 166 56.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 5.3e-50 201.4 166 56.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 5.3e-50 201.4 166 56.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 5.3e-50 201.4 166 56.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 5.3e-50 201.4 166 59.0
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.9e-50 201.1 170 56.5
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.2e-49 200.3 167 56.3
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.0e-49 199.5 166 57.8
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.6e-49 199.1 166 54.8
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.5e-49 198.4 166 57.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 7.7e-49 197.6 167 56.9
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 7.7e-49 197.6 166 55.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 7.7e-49 197.6 167 55.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.0e-48 197.2 167 57.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.0e-48 197.2 168 56.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.0e-48 197.2 167 57.5
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.3e-48 196.8 167 56.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.3e-48 196.8 166 54.8
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.7e-48 196.4 166 54.2
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.7e-48 196.4 167 56.3
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.2e-48 196.1 166 54.2
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.0e-48 194.9 166 55.4
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 5.0e-48 194.9 166 55.4
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 5.0e-48 194.9 166 54.8
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 5.0e-48 194.9 166 56.6
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.1e-47 193.7 166 56.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.4e-47 193.4 166 54.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.4e-47 193.4 166 54.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.9e-47 193.0 166 54.8
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.5e-47 192.6 168 52.4
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.2e-47 192.2 166 53.6
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 4.2e-47 191.8 166 54.8
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 4.2e-47 191.8 166 53.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 5.5e-47 191.4 166 53.6
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 5.5e-47 191.4 169 53.3
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 5.5e-47 191.4 166 54.8
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 7.2e-47 191.0 173 52.0
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 7.2e-47 191.0 166 53.0
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 9.4e-47 190.7 166 53.6
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 9.4e-47 190.7 166 53.6
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.2e-46 190.3 166 53.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.2e-46 190.3 168 54.8
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.1e-46 189.5 166 54.2
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.7e-46 189.1 174 52.9
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 4.7e-46 188.3 166 54.8
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 6.1e-46 188.0 166 54.8
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 6.1e-46 188.0 166 52.4
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.4e-45 186.8 167 54.5
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.8e-45 186.4 171 50.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.8e-45 186.4 176 51.7
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.3e-45 186.0 169 52.1
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 3.0e-45 185.7 173 50.3
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 6.7e-45 184.5 168 54.2
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.5e-44 183.3 167 51.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.0e-44 183.0 171 53.2
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.6e-44 182.6 174 52.3
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.4e-44 181.0 170 50.6
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.7e-43 178.7 166 51.2
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.8e-43 178.3 168 50.0
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 6.3e-43 177.9 166 50.0
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 8.2e-43 177.6 168 49.4
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 8.2e-43 177.6 166 51.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 2.4e-42 176.0 169 49.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 3.1e-42 175.6 168 49.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 3.1e-42 175.6 166 50.0
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 4.1e-42 175.3 166 51.8
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.0e-42 174.5 166 53.0
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 9.1e-42 174.1 170 51.8
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 5.9e-41 171.4 166 50.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-40 169.9 166 50.0
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.7e-40 169.9 167 51.5
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.9e-40 169.1 167 48.5
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 2.9e-40 169.1 166 48.8
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 3.6e-38 162.2 168 48.8
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.4e-37 160.2 167 46.1
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.8e-37 159.8 167 44.9
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 6.7e-37 157.9 167 45.5
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 8.8e-37 157.5 167 46.1
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.1e-36 157.1 178 44.9
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-36 156.8 166 48.2
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.5e-36 156.8 166 48.2
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.5e-36 156.8 167 44.9
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 7.5e-36 154.5 109 71.6
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 4.8e-35 151.8 175 42.9
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.1e-34 150.6 172 45.3
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.1e-34 148.7 162 47.5
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.6e-33 146.7 133 55.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.0e-32 144.1 166 44.6
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-31 139.8 166 44.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-31 139.8 166 44.0
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 5.5e-31 138.3 162 40.7
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-30 136.7 166 42.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-30 136.7 166 42.8
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.7e-30 135.2 146 44.5
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.0e-30 134.4 141 48.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.2e-29 131.7 112 55.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 8.8e-29 131.0 166 39.8
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 2.0e-28 129.8 166 44.6
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.7e-28 128.3 170 44.1
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.8e-26 123.2 113 50.4
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.0e-25 119.8 70 74.3
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 3.8e-24 115.5 90 55.6
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.9e-23 113.2 96 52.1
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-21 107.1 109 50.5
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.8e-21 106.7 82 57.3
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.2e-20 104.0 62 80.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.5e-20 103.6 106 50.9
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.6e-20 102.8 168 36.3
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-20 102.1 168 36.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 9.8e-20 100.9 58 72.4
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-19 98.6 173 38.7
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 3.5e-17 92.4 119 41.2
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.5e-17 92.0 90 47.8
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 5.0e-16 88.6 161 33.5
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.0e-13 80.9 75 48.0
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 8.3e-11 71.2 86 43.0
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.5e-07 60.5 103 34.0
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.9e-07 60.1 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.3e-07 59.3 131 31.3
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.8e-06 56.2 82 36.6
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.8e-06 56.2 47 51.1
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.7e-06 55.5 63 44.4


User provided reference genes

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