Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.6e-29 132.1 67 100.0
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-25 119.0 67 88.1
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.0e-25 117.5 67 86.6
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-24 115.9 67 85.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-24 115.9 67 85.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.2e-24 115.9 67 85.1
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.2e-24 115.9 67 85.1
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-23 111.3 65 89.2
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.7e-21 104.8 62 80.6
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.6e-21 104.0 62 79.0
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.0e-21 103.6 62 79.0
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.0e-20 101.3 62 77.4
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 8.7e-20 99.8 61 77.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.9e-19 98.6 63 74.6
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.3e-18 95.9 62 75.8
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.6e-18 95.5 62 75.8
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.6e-18 94.4 59 72.9
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.4e-17 92.4 62 74.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-17 92.4 62 74.2
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-17 92.4 62 74.2
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 5.3e-17 90.5 62 69.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.8e-16 87.0 63 68.3
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.1e-14 82.8 64 60.9
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.4e-14 81.6 64 57.8
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.2e-14 81.3 64 56.2
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 9.3e-14 79.7 64 57.8
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 9.3e-14 79.7 63 61.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.1e-13 78.6 64 56.2
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 2.1e-13 78.6 64 59.4
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.5e-13 77.8 64 54.7
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.5e-13 77.8 64 59.4
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 3.5e-13 77.8 64 56.2
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 4.6e-13 77.4 64 59.4
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 7.9e-13 76.6 64 53.1
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.3e-12 75.9 64 56.2
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.3e-12 75.9 62 56.5
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-12 75.5 64 54.7
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-12 75.5 64 54.7
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.8e-12 75.5 62 58.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.8e-12 75.5 63 58.7
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.3e-12 75.1 64 59.4
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.3e-12 75.1 64 54.7
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 3.9e-12 74.3 73 52.1
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.1e-12 73.9 67 56.7
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.7e-12 73.6 57 59.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.7e-12 73.6 63 55.6
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 8.7e-12 73.2 63 54.0
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.1e-11 72.8 64 56.2
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.1e-11 72.8 63 58.7
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 1.1e-11 72.8 64 54.7
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.1e-11 72.8 63 54.0
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.1e-11 72.8 62 56.5
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.5e-11 72.4 63 58.7
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.9e-11 72.0 64 51.6
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.9e-11 72.0 64 51.6
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.9e-11 72.0 64 51.6
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.5e-11 71.6 68 55.9
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.5e-11 71.6 64 57.8
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.5e-11 71.6 63 52.4
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.5e-11 71.6 63 52.4
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.3e-11 71.2 62 53.2
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.3e-11 71.2 63 54.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 4.3e-11 70.9 65 55.4
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 7.4e-11 70.1 68 51.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 7.4e-11 70.1 66 53.0
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 7.4e-11 70.1 69 52.2
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 7.4e-11 70.1 73 49.3
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 7.4e-11 70.1 63 50.8
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 7.4e-11 70.1 62 59.7
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.3e-10 69.3 67 50.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.6e-10 68.9 60 51.7
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.6e-10 68.9 63 54.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.1e-10 68.6 63 54.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 2.1e-10 68.6 62 56.5
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 2.8e-10 68.2 62 50.0
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 3.7e-10 67.8 65 52.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.7e-10 67.8 63 55.6
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.7e-10 67.8 64 54.7
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 3.7e-10 67.8 63 52.4
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 4.8e-10 67.4 63 52.4
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 6.2e-10 67.0 64 54.7
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 6.2e-10 67.0 63 54.0
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 6.2e-10 67.0 63 54.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 6.2e-10 67.0 63 54.0
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 8.2e-10 66.6 63 52.4
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 8.2e-10 66.6 63 57.1
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.1e-09 66.2 64 50.0
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.1e-09 66.2 63 52.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.4e-09 65.9 63 49.2
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.4e-09 65.9 68 51.5
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.4e-09 65.9 63 55.6
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.8e-09 65.5 64 53.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.8e-09 65.5 67 49.3
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.1e-09 64.7 66 50.0
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 3.1e-09 64.7 65 50.8
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.1e-09 64.7 70 50.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.1e-09 64.7 61 57.4
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.9e-09 63.5 62 48.4
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 6.9e-09 63.5 63 52.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-08 62.8 63 49.2
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.5e-08 62.4 68 48.5
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.0e-08 62.0 71 45.1
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.0e-08 62.0 47 59.6
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.6e-08 61.6 61 47.5
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 3.4e-08 61.2 65 47.7
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.4e-08 61.2 65 47.7
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 3.4e-08 61.2 63 54.0
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 5.8e-08 60.5 62 51.6
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 7.6e-08 60.1 63 47.6
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.3e-07 59.3 62 46.8
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-07 59.3 68 47.1
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.7e-07 58.9 66 45.5
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.2e-07 58.5 67 47.8
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.2e-07 58.5 63 44.4
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.9e-07 58.2 62 48.4
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 2.9e-07 58.2 64 53.1
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.8e-07 57.8 48 56.2
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.9e-07 57.4 63 46.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.9e-07 57.4 62 46.8
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 6.5e-07 57.0 59 49.2
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 6.5e-07 57.0 68 45.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 6.5e-07 57.0 46 54.3
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 8.4e-07 56.6 62 46.8
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.1e-06 56.2 65 49.2
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.4e-06 55.8 59 50.8
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-06 55.8 62 50.0
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.4e-06 55.8 59 49.2
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-06 55.1 67 46.3
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-06 55.1 67 46.3
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-06 55.1 67 46.3
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-06 55.1 67 46.3
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 2.5e-06 55.1 45 51.1
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-06 54.7 72 43.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-06 53.9 64 48.4
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-06 53.9 64 48.4
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 5.5e-06 53.9 45 48.9
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 9.3e-06 53.1 36 55.6
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 9.3e-06 53.1 48 52.1


User provided reference genes

Program Settings