Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.8e-30 134.4 79 100.0
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 9.2e-29 129.8 80 98.8
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.6e-25 119.0 79 77.2
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.6e-25 119.0 79 77.2
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.6e-25 119.0 79 77.2
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.6e-25 119.0 79 77.2
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.6e-25 119.0 79 77.2
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 8.1e-25 116.7 79 75.9
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.5e-23 112.5 82 87.8
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 9.9e-23 109.8 79 73.4
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 2.3e-19 98.6 76 69.7
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.1e-19 97.4 85 68.2
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 8.7e-19 96.7 76 68.4
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 8.7e-19 96.7 76 68.4
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 8.7e-19 96.7 76 68.4
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.8e-17 91.7 84 63.1
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 4.8e-17 90.9 77 75.3
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 4.8e-17 90.9 77 75.3
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 8.1e-17 90.1 84 72.6
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 8.1e-17 90.1 84 61.9
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.4e-16 88.6 84 61.9
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 4.0e-16 87.8 81 72.8
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 4.0e-16 87.8 81 72.8
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 6.9e-16 87.0 84 69.0
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 6.9e-16 87.0 84 69.0
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.2e-15 86.3 84 59.5
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 3.4e-15 84.7 84 66.7
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 9.9e-15 83.2 85 69.4
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 9.9e-15 83.2 85 69.4
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 9.9e-15 83.2 85 69.4
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 9.9e-15 83.2 85 69.4
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 9.9e-15 83.2 59 67.8
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 68.6
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-14 82.8 86 68.6
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 8.4e-14 80.1 84 70.2
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 8.4e-14 80.1 84 70.2
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 8.4e-14 80.1 84 70.2
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 5.4e-13 77.4 81 70.4
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 5.4e-13 77.4 81 70.4
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 1.6e-12 75.9 87 59.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.3e-11 72.8 61 59.0
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 4.3e-10 67.8 81 64.2
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 4.3e-10 67.8 83 62.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.2e-09 63.9 61 54.1
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 8.1e-09 63.5 61 65.6
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 3.1e-08 61.6 55 50.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.3e-08 60.8 58 53.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 9.0e-08 60.1 67 44.8
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-07 59.7 67 44.8
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-07 59.3 78 41.0
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.0e-07 58.9 60 58.3
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.6e-07 58.5 65 60.0
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.6e-07 58.5 65 60.0
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.6e-07 58.5 68 47.1
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.4e-07 58.2 37 70.3
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 37 67.6
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.8e-07 57.4 65 46.2
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 9.9e-07 56.6 68 47.1
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 9.9e-07 56.6 48 54.2
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 43 60.5
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.7e-06 55.8 82 39.0
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 54 51.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.2e-06 55.5 66 48.5
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.2e-06 55.5 64 48.4
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.2e-06 55.5 67 46.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.2e-06 55.5 67 46.3
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.9e-06 55.1 64 50.0
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.9e-06 55.1 62 46.8
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 50.9
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.9e-06 54.3 57 50.9
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.9e-06 54.3 70 47.1
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 4.9e-06 54.3 64 48.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 6.4e-06 53.9 66 47.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 6.4e-06 53.9 64 48.4
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.4e-06 53.5 55 54.5
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 8.4e-06 53.5 46 54.3


User provided reference genes

Program Settings