Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.9e-103 378.6 199 100.0
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.8e-89 332.8 196 91.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.3e-71 273.5 201 77.1
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.5e-70 269.2 200 76.0
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 4.6e-69 265.0 197 73.1
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 6.7e-60 234.6 199 67.8
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-59 232.3 206 67.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-52 210.3 255 52.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.0e-47 194.1 310 43.9
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 6.3e-42 174.9 126 78.6
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.1e-41 172.2 311 41.2
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.1e-38 164.1 212 50.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.5e-38 163.7 178 52.8
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 6.1e-37 158.3 217 49.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 6.8e-36 154.8 214 47.7
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-35 154.1 214 47.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.5e-35 153.7 219 47.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.8e-34 148.7 217 47.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.1e-33 146.0 222 45.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 4.1e-33 145.6 125 66.4
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.5e-32 142.1 190 48.9
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.3e-31 140.6 180 52.8
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.2e-30 136.0 125 65.6
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.7e-29 132.1 238 43.3
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 6.8e-28 128.3 200 47.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.9e-26 122.1 196 44.4
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.0e-25 118.2 195 43.6
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 7.0e-25 118.2 176 46.0
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.0e-24 116.7 126 56.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.7e-24 116.3 171 46.2
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.7e-23 113.6 198 41.9
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 5.0e-23 112.1 170 46.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.0e-23 112.1 199 43.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 8.6e-23 111.3 176 44.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-22 110.9 201 39.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.1e-22 110.9 197 42.1
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-22 110.9 172 45.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.5e-22 110.5 174 46.6
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 3.3e-22 109.4 171 46.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 5.6e-22 108.6 180 42.8
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.5e-22 107.8 198 41.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.5e-22 107.8 207 41.1
CARHR231330 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.6e-21 107.1 76 75.0
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.6e-21 107.1 178 43.3
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.6e-21 107.1 204 42.6
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.6e-21 107.1 174 43.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.8e-21 106.3 201 41.3
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 4.7e-21 105.5 177 44.6
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.7e-21 105.5 207 40.6
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.7e-21 105.5 202 39.1
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.1e-21 105.1 196 41.8
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 6.1e-21 105.1 194 41.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 6.1e-21 105.1 206 42.7
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.1e-21 105.1 197 40.6
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 8.0e-21 104.8 179 45.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 8.0e-21 104.8 179 45.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.4e-20 104.0 201 39.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.4e-20 104.0 210 41.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-20 103.6 178 42.1
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.8e-20 103.6 207 40.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.8e-20 103.6 207 40.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.3e-20 103.2 202 38.6
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.0e-20 102.8 177 43.5
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.0e-20 102.8 204 39.7
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 3.0e-20 102.8 205 39.5
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.0e-20 102.8 174 42.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.0e-20 102.4 177 44.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 6.8e-20 101.7 161 44.7
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 6.8e-20 101.7 201 41.8
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.0e-19 100.1 178 42.1
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.6e-19 99.8 177 42.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-19 99.8 174 42.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-19 99.8 175 43.4
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.4e-19 99.0 202 38.6
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 5.7e-19 98.6 172 45.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 5.7e-19 98.6 176 43.2
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.7e-18 97.1 173 41.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.7e-18 97.1 175 42.3
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.7e-18 97.1 174 41.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.7e-18 97.1 182 41.8
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.9e-18 95.5 121 52.1
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.9e-18 95.5 121 52.1
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.4e-18 95.1 201 39.3
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.4e-17 94.0 210 37.6
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.4e-17 94.0 210 37.6
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.8e-17 93.6 196 40.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.8e-17 93.6 230 35.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.8e-17 93.6 205 39.5
BcaB06g26463 Brassica carinata HOM05D005115 ORTHO05D005703 3.2e-17 92.8 97 59.8
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.4e-17 92.0 201 38.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 7.0e-17 91.7 161 42.9
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.6e-16 90.5 218 37.6
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.0e-16 90.1 130 46.9
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.0e-16 90.1 203 37.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.7e-16 89.7 188 42.6
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.6e-16 89.0 172 41.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 5.9e-16 88.6 202 40.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 7.8e-16 88.2 121 47.9
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 7.8e-16 88.2 211 37.4
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.0e-15 87.8 176 39.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.0e-15 87.8 247 33.6
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.7e-15 87.0 227 35.2
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.7e-15 87.0 187 39.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 8.6e-15 84.7 120 48.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 8.6e-15 84.7 178 39.3
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.6e-15 84.7 139 44.6
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.1e-14 84.3 120 46.7
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.5e-14 84.0 120 46.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.5e-14 84.0 178 37.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.9e-14 83.6 174 43.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.5e-14 83.2 129 44.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 4.3e-14 82.4 118 44.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 5.6e-14 82.0 194 38.7
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.1e-13 80.1 122 43.4
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.1e-13 80.1 122 43.4
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.1e-13 80.1 113 50.4
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.8e-13 79.7 204 37.3
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 6.2e-13 78.6 120 44.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.4e-12 77.4 129 42.6
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.8e-12 77.0 159 38.4
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 5.2e-12 75.5 124 44.4
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 8.9e-12 74.7 121 44.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.5e-11 73.9 177 35.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.8e-11 71.2 181 34.8
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 2.9e-10 69.7 112 44.6
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 2.9e-10 69.7 132 40.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 4.9e-10 68.9 119 42.0
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 4.9e-10 68.9 169 35.5
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.1e-09 67.8 99 46.5
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 4.1e-09 65.9 113 42.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.6e-08 63.9 119 42.0
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 7.8e-08 61.6 71 50.7
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.1e-06 57.8 174 34.5


User provided reference genes

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