Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 8.6e-137 490.3 251 100.0
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 5.0e-129 464.5 251 93.6
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 7.8e-122 440.7 251 91.2
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.1e-115 420.2 251 84.9
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 4.6e-114 414.8 252 86.5
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.8e-111 405.6 251 84.9
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 4.4e-109 398.3 253 83.0
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 7.1e-107 391.0 252 80.2
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.3e-105 386.7 251 82.5
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.3e-105 386.0 251 80.9
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 3.0e-105 385.6 252 83.3
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 8.6e-105 384.0 251 80.5
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 6.2e-103 377.9 262 77.1
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 2.6e-101 372.5 251 80.1
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 7.1e-99 364.4 251 78.9
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.7e-97 359.8 254 74.0
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 7.3e-88 327.8 202 83.7
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 3.2e-75 285.8 242 62.4
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 7.4e-72 274.6 242 62.0
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 9.6e-72 274.2 245 60.0
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.3e-71 273.9 246 59.3
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.6e-71 273.5 241 58.9
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.6e-71 273.5 243 60.5
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 3.7e-71 272.3 246 56.9
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 3.7e-71 272.3 246 56.9
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.4e-70 269.6 242 59.9
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.3e-70 268.5 247 56.7
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 6.9e-70 268.1 255 56.5
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 6.9e-70 268.1 242 59.1
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.2e-69 267.3 245 56.3
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.2e-69 267.3 246 56.9
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.8e-69 265.0 247 56.3
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 5.8e-69 265.0 243 60.1
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.0e-68 264.2 246 56.5
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 5.0e-68 261.9 249 55.8
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 5.0e-68 261.9 241 57.3
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 8.4e-68 261.2 241 56.8
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 2.5e-67 259.6 239 57.7
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 3.2e-67 259.2 246 55.7
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.5e-67 258.5 245 57.6
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 9.3e-67 257.7 239 57.7
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.2e-66 257.3 249 56.6
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.6e-66 256.9 245 57.6
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.1e-66 256.5 245 57.6
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 7.9e-66 254.6 243 55.6
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.0e-65 254.2 249 54.2
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 1.3e-65 253.8 250 54.8
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.8e-65 253.4 228 57.9
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 5.1e-65 251.9 229 56.8
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 5.1e-65 251.9 233 57.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 6.7e-65 251.5 237 57.0
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 1.5e-64 250.4 184 67.9
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.5e-64 250.4 240 53.8
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 2.5e-64 249.6 240 57.5
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 4.3e-64 248.8 247 53.4
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 7.4e-64 248.1 238 54.6
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 9.7e-64 247.7 230 57.4
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 9.7e-64 247.7 223 60.1
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.3e-63 247.3 244 55.3
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.2e-63 246.5 232 55.6
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.8e-63 246.1 240 56.2
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 2.8e-63 246.1 240 57.9
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 8.2e-63 244.6 247 55.9
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 8.2e-63 244.6 243 58.4
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 1.1e-62 244.2 248 52.8
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 1.8e-62 243.4 188 64.4
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 2.4e-62 243.0 238 54.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 4.1e-62 242.3 243 53.5
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 9.0e-62 241.1 232 56.5
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.2e-61 240.7 243 53.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.5e-61 240.4 243 54.3
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.0e-61 240.0 244 53.3
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 3.4e-61 239.2 234 58.1
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 3.4e-61 239.2 246 55.3
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 5.9e-61 238.4 244 57.8
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 7.7e-61 238.0 246 55.3
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 9.4e-59 231.1 181 64.6
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.6e-58 230.3 263 47.5
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.0e-57 227.6 210 55.7
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 8.8e-57 224.6 213 54.5
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.0e-56 223.4 230 54.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 2.0e-56 223.4 263 48.3
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 4.3e-56 222.2 171 76.6
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.3e-56 222.2 171 76.6
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 4.3e-56 222.2 171 76.6
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 5.3e-54 215.3 184 60.9
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.4e-53 212.6 206 55.3
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.4e-53 212.6 241 50.6
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 4.5e-53 212.2 249 49.0
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.2e-51 206.1 245 50.6
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 2.7e-50 203.0 251 48.2
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 7.9e-50 201.4 136 70.6
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 5.1e-49 198.7 196 53.1
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.4e-48 195.7 243 46.1
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 7.4e-48 194.9 212 49.5
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 7.0e-46 188.3 232 47.0
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.3e-44 184.1 246 46.7
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 5.2e-41 172.2 222 43.2
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.4e-38 164.1 195 43.1
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.2e-37 161.0 246 41.1
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 1.0e-36 157.9 186 47.3
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 6.1e-34 148.7 204 45.1
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 4.0e-25 119.4 155 44.5
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.0e-25 119.4 137 48.2
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 6.3e-23 112.1 122 50.0
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 6.3e-23 112.1 133 46.6
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 1.1e-22 111.3 143 47.6
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 1.4e-22 110.9 142 48.6
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.2e-21 107.8 251 35.1
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 2.0e-21 107.1 136 45.6
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 7.7e-21 105.1 190 39.5
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 7.7e-21 105.1 190 39.5
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.3e-20 104.4 139 46.8
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 8.6e-20 101.7 143 46.9
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.5e-19 100.9 145 44.8
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.5e-19 100.1 126 45.2
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 2.1e-18 97.1 127 44.1
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 3.6e-18 96.3 119 46.2
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 4.7e-18 95.9 152 39.5
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 2.3e-17 93.6 104 53.8
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 2.9e-15 86.7 138 42.8
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.9e-15 85.9 128 41.4
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 4.3e-11 72.8 128 35.9
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.0e-09 68.2 64 53.1
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 1.9e-06 57.4 59 57.6


User provided reference genes

Program Settings