Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.1e-37 157.9 78 100.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.1e-33 145.2 78 92.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.3e-30 136.0 78 87.2
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.3e-27 125.9 78 83.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 2.9e-27 124.8 78 80.8
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 6.5e-27 123.6 78 83.3
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.9e-26 122.1 78 82.1
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.5e-26 121.7 78 80.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-24 116.3 77 76.6
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.3e-24 115.2 76 80.3
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 3.0e-24 114.8 78 78.2
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.0e-24 114.8 76 80.3
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.2e-24 114.0 75 77.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 2.0e-23 112.1 73 76.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.7e-23 110.5 76 75.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.8e-21 105.5 76 69.7
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.4e-21 104.0 86 67.4
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-20 102.1 72 73.6
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 4.5e-20 100.9 72 72.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.0e-16 89.7 81 61.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.4e-16 89.4 80 61.2
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 2.3e-16 88.6 81 60.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.0e-16 88.2 81 60.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.0e-16 88.2 81 60.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 5.2e-16 87.4 80 57.5
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.2e-16 87.4 81 60.5
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 8.9e-16 86.7 81 59.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 8.9e-16 86.7 82 59.8
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 8.9e-16 86.7 81 58.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.2e-15 86.3 81 54.3
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.2e-15 86.3 81 59.3
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.5e-15 85.9 77 61.0
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.4e-15 84.3 78 55.1
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.7e-15 84.0 83 56.6
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.8e-15 83.2 82 57.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.3e-14 82.8 78 60.3
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.7e-14 82.4 72 61.1
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.2e-14 82.0 74 59.5
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.2e-14 82.0 74 59.5
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.2e-14 82.0 81 54.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 2.2e-14 82.0 74 59.5
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 2.9e-14 81.6 74 62.2
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 2.9e-14 81.6 74 62.2
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.9e-14 81.6 74 59.5
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.7e-14 81.3 77 58.4
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.9e-14 80.9 81 55.6
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.9e-14 80.9 79 57.0
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 6.3e-14 80.5 75 57.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.3e-14 80.5 79 54.4
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.3e-14 80.1 76 56.6
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 8.3e-14 80.1 77 55.8
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 59.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.1e-13 79.7 79 54.4
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 53.0
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 2.4e-13 78.6 76 55.3
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.4e-13 78.6 76 57.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.4e-13 78.6 76 56.6
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 76 57.9
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 55.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.2e-13 78.2 79 57.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.1e-13 77.8 76 56.6
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.1e-13 77.8 71 63.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.4e-13 77.4 75 56.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 5.4e-13 77.4 85 50.6
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 7.0e-13 77.0 74 56.8
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 9.2e-13 76.6 76 57.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 9.2e-13 76.6 76 52.6
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 54.4
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.6e-12 75.9 81 54.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.6e-12 75.9 70 55.7
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.0e-12 75.5 78 53.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.0e-12 75.5 75 56.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 2.0e-12 75.5 76 53.9
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.6e-12 74.3 82 53.7
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.6e-12 74.3 83 51.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.6e-12 74.3 84 50.0
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.9e-12 73.9 70 55.7
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.8e-12 73.6 79 53.2
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.8e-12 73.6 78 56.4
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.8e-12 73.6 78 56.4
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.8e-12 73.6 77 51.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 7.8e-12 73.6 81 51.9
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-11 72.8 74 50.0
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.3e-11 72.8 84 50.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.3e-11 72.8 84 50.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.7e-11 72.4 82 52.4
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-11 72.0 77 53.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.9e-11 71.6 75 54.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.9e-11 71.6 81 50.6
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.9e-11 71.6 79 50.6
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.9e-11 71.6 78 56.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.9e-11 71.6 79 51.9
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.9e-11 71.2 81 51.9
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.9e-11 71.2 74 52.7
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.9e-11 71.2 79 51.9
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.9e-11 71.2 77 48.1
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.9e-11 71.2 71 54.9
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 3.9e-11 71.2 68 57.4
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.0e-11 70.9 76 51.3
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.0e-11 70.9 79 49.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 5.0e-11 70.9 79 48.1
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.6e-11 70.5 85 47.1
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 8.6e-11 70.1 76 51.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.6e-11 70.1 68 55.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 8.6e-11 70.1 72 54.2
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 8.6e-11 70.1 89 47.2
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.5e-10 69.3 76 51.3
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.5e-10 68.6 80 52.5
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.5e-10 68.6 76 52.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.5e-10 68.6 83 48.2
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.5e-10 68.6 82 50.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 3.3e-10 68.2 76 52.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.3e-10 67.8 71 52.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-10 67.8 82 48.8
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 4.3e-10 67.8 76 52.6
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.3e-10 67.8 80 52.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 76 50.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.3e-10 67.8 74 54.1
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.3e-10 67.8 77 51.9
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 5.6e-10 67.4 82 51.2
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 5.6e-10 67.4 82 50.0
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 5.6e-10 67.4 83 48.2
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 5.6e-10 67.4 74 52.7
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 5.6e-10 67.4 73 54.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.3e-10 67.0 72 50.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.3e-10 67.0 75 52.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.3e-10 67.0 82 50.0
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.3e-10 67.0 71 54.9
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.5e-10 66.6 91 47.3
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 9.5e-10 66.6 91 47.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 9.5e-10 66.6 74 54.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 9.5e-10 66.6 84 51.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-09 66.2 91 45.1
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.1e-09 65.5 76 50.0
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.1e-09 65.5 91 46.2
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.1e-09 65.5 80 46.2
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.1e-09 65.5 71 52.1
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.6e-09 64.7 80 48.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.7e-09 64.3 74 47.3
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 8.0e-09 63.5 56 58.9
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.0e-09 63.5 90 43.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.0e-08 63.2 85 44.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.0e-08 63.2 79 46.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.4e-08 62.8 80 48.8
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-08 62.8 80 45.0
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.8e-08 62.4 80 45.0
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.3e-08 62.0 81 44.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 3.1e-08 61.6 81 43.2
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.0e-08 61.2 79 49.4
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 4.0e-08 61.2 86 41.9
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 8.9e-08 60.1 98 37.8
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.5e-07 59.3 78 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-07 58.2 71 45.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.7e-06 55.8 78 43.6
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-06 55.8 77 45.5
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 1.7e-06 55.8 77 45.5
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.2e-06 55.5 45 60.0
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.7e-06 54.7 84 41.7


User provided reference genes

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