Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 1.2e-224 783.5 598 100.0
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 3.1e-193 679.1 600 90.5
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.4e-156 557.4 600 76.0
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 5.9e-152 542.0 600 70.5
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 5.9e-152 542.0 600 70.5
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 5.9e-152 542.0 600 70.8
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 2.2e-151 540.0 599 68.9
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 2.2e-151 540.0 599 68.9
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 3.4e-147 526.2 600 78.3
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 7.5e-147 525.0 596 75.5
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 2.7e-144 516.5 599 77.8
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 5.1e-111 406.0 604 70.2
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 3.3e-110 403.3 553 66.5
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 2.4e-100 370.5 600 59.5
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 2.9e-90 337.0 580 52.1
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.8e-87 327.8 580 56.9
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.3e-85 321.6 593 45.7
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.8e-85 319.7 580 56.9
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 8.1e-85 318.9 576 50.7
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 7.9e-80 302.4 603 37.1
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 7.9e-80 302.4 582 51.2
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 3.9e-79 300.1 595 49.7
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.2e-77 292.7 618 40.9
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 8.2e-77 292.4 598 38.5
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 2.4e-76 290.8 571 49.0
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.5e-75 288.1 579 56.0
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 2.6e-75 287.3 580 50.0
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 5.8e-75 286.2 583 53.7
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 1.0e-74 285.4 571 47.3
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 1.3e-74 285.0 575 49.6
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 8.4e-74 282.3 593 49.7
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 1.4e-73 281.6 581 45.8
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 1.9e-73 281.2 576 49.3
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 7.1e-73 279.3 583 51.3
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.1e-72 277.7 608 32.6
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 6.0e-72 276.2 570 50.9
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 6.0e-72 276.2 577 50.6
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.0e-71 275.4 616 45.0
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 1.0e-71 275.4 568 40.7
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 1.0e-71 275.4 571 51.1
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 1.3e-71 275.0 579 52.0
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 3.0e-71 273.9 610 39.5
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.5e-70 271.6 551 50.1
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.9e-70 271.2 578 54.5
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.9e-70 271.2 616 42.0
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 4.3e-70 270.0 588 52.4
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 7.4e-70 269.2 599 54.1
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 1.6e-69 268.1 571 56.7
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.6e-69 268.1 586 47.1
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 8.2e-69 265.8 574 48.3
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 8.2e-69 265.8 586 51.7
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.8e-68 264.6 604 40.2
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 3.1e-68 263.8 586 52.7
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 3.1e-68 263.8 593 38.1
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 9.0e-68 262.3 576 55.6
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.2e-67 261.9 619 44.7
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 7.6e-67 259.2 596 49.5
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 2.2e-66 257.7 604 47.7
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.9e-65 254.6 571 55.9
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.5e-65 254.2 585 41.0
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 3.2e-65 253.8 557 49.7
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 4.2e-65 253.4 617 43.4
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 7.2e-65 252.7 572 55.2
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 1.2e-64 251.9 598 50.3
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 1.6e-64 251.5 575 45.0
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 4.6e-64 250.0 575 45.4
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 4.6e-64 250.0 599 52.3
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 4.6e-64 250.0 598 49.5
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 5.1e-63 246.5 582 44.7
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 1.9e-62 244.6 572 50.0
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 2.5e-62 244.2 598 49.5
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 7.4e-62 242.7 593 44.0
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 8.2e-61 239.2 593 49.2
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.1e-60 237.3 534 54.9
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 1.2e-59 235.3 588 45.6
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 2.0e-59 234.6 604 46.4
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 5.9e-59 233.0 573 42.2
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 1.1e-57 228.8 553 43.2
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.2e-56 225.3 624 41.0
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 7.9e-56 222.6 586 47.6
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 6.3e-53 213.0 595 46.4
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 8.2e-53 212.6 611 44.0
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 8.2e-53 212.6 580 48.8
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.8e-52 211.5 324 51.2
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 3.1e-52 210.7 323 49.2
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 5.9e-51 206.5 571 47.3
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 7.7e-51 206.1 322 62.7
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 4.2e-49 200.3 532 44.9
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 1.6e-48 198.4 590 51.4
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 2.7e-48 197.6 593 44.4
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 4.8e-45 186.8 541 36.8
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 2.6e-43 181.0 515 48.3
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.0e-42 179.1 603 46.9
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 8.0e-40 169.5 573 45.5
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 4.0e-39 167.2 512 44.9
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 6.3e-37 159.8 367 39.8
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 4.1e-36 157.1 583 32.6
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 4.1e-36 157.1 583 32.6
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 3.2e-33 147.5 503 41.4
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 8.8e-31 139.4 547 45.2
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 4.8e-29 133.7 520 36.9
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 2.7e-27 127.9 503 45.1
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 6.1e-24 116.7 607 20.9
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.2e-22 112.5 322 39.4
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 8.3e-21 106.3 152 40.8
BcaNung04238 Brassica carinata HOM05D006572 ORTHO05D008181 1.4e-20 105.5 86 72.1
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 9.2e-12 76.3 211 39.8
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.6e-08 65.5 109 36.7
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 4.7e-08 63.9 54 55.6
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 8.0e-08 63.2 214 44.4
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.4e-07 62.4 54 53.7
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.1e-07 61.2 104 37.5
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 8.9e-07 59.7 90 37.8


User provided reference genes

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