Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23760 Arabidopsis thaliana HOM05D007782 ORTHO05D009833 4.7e-61 237.7 117 100.0
Thhalv10026535m.g Eutrema salsugineum HOM05D007782 ORTHO05D009833 9.5e-30 133.7 100 69.0
AL7G29590 Arabidopsis lyrata HOM05D007782 ORTHO05D009833 2.6e-27 125.6 71 87.3
Carub.0007s1735 Capsella rubella HOM05D007782 ORTHO05D009833 2.2e-26 122.5 71 83.1
Aa31LG6G7000 Aethionema arabicum HOM05D007782 ORTHO05D009833 2.9e-26 122.1 70 84.3
Sp7g21730 Schrenkiella parvula HOM05D007782 ORTHO05D009833 1.1e-25 120.2 71 81.7
CARHR231160 Cardamine hirsuta HOM05D007782 ORTHO05D009833 1.9e-25 119.4 71 81.7
BolC7t45807H Brassica oleracea HOM05D007782 ORTHO05D009833 1.6e-24 116.3 72 80.6
C07p53110 Brassica napus HOM05D007782 ORTHO05D009833 1.0e-23 113.6 72 79.2
A03p54750 Brassica napus HOM05D007782 ORTHO05D009833 3.9e-23 111.7 71 80.3
BraA03t14542Z Brassica rapa HOM05D007782 ORTHO05D009833 3.9e-23 111.7 71 80.3
AL6G45280 Arabidopsis lyrata HOM05D007782 ORTHO05D009833 5.0e-23 111.3 69 76.8
BcaNung05927 Brassica carinata HOM05D007782 ORTHO05D009833 5.0e-23 111.3 72 77.8
THA.LOC104814903 Tarenaya hassleriana HOM05D007782 ORTHO05D009833 1.6e-21 106.3 69 73.9
Thhalv10029109m.g Eutrema salsugineum HOM05D007782 ORTHO05D009833 4.7e-21 104.8 70 70.0
Sp6g06300 Schrenkiella parvula HOM05D007782 ORTHO05D009833 6.2e-21 104.4 64 76.6
BcaNung03194 Brassica carinata HOM05D007782 ORTHO05D009833 2.3e-20 102.4 90 63.3
CARHR255470 Cardamine hirsuta HOM05D007782 ORTHO05D009833 3.1e-20 102.1 70 72.9
Thecc.03G292200 Theobroma cacao HOM05D007782 ORTHO05D009833 1.6e-16 89.7 64 62.5
Manes.01G046100 Manihot esculenta HOM05D007782 ORTHO05D009833 4.6e-16 88.2 56 69.6
Potri.003G136500 Populus trichocarpa HOM05D007782 ORTHO05D009833 7.8e-16 87.4 56 67.9
Sabra03G0098200 Salix brachista HOM05D007782 ORTHO05D009833 7.8e-16 87.4 63 58.7
CsaV3_5G002190 Cucumis sativus L. HOM05D007782 ORTHO05D009833 1.3e-15 86.7 56 69.6
QL02p031553 Quercus lobata HOM05D007782 ORTHO05D009833 2.3e-15 85.9 57 63.2
MELO3C005735.2 Cucumis melo HOM05D007782 ORTHO05D009833 3.0e-15 85.5 56 67.9
TAR636G2384 Trochodendron aralioides HOM05D007782 ORTHO05D009833 3.0e-15 85.5 57 68.4
Cfa012852 Carpinus fangiana HOM05D007782 ORTHO05D009833 3.9e-15 85.1 59 66.1
ClCG01G002060 Citrullus lanatus HOM05D007782 ORTHO05D009833 3.9e-15 85.1 56 67.9
Haze_08681 Corylus avellana HOM05D007782 ORTHO05D009833 3.9e-15 85.1 59 66.1
Prupe.5G114300 Prunus persica HOM05D007782 ORTHO05D009833 6.6e-15 84.3 56 69.6
MD06G1100800 Malus domestica HOM05D007782 ORTHO05D009833 8.6e-15 84.0 56 67.9
GSVIVG01019488001 Vitis vinifera HOM05D007782 ORTHO05D009833 8.6e-15 84.0 60 63.3
RcHm_v2.0_Chr7g0195561 Rosa chinensis HOM05D007782 ORTHO05D009833 1.5e-14 83.2 55 65.5
Cc08_g15700 Coffea canephora HOM05D007782 ORTHO05D009833 1.9e-14 82.8 61 60.7
Hund14240 Selenicereus undatus HOM05D007782 ORTHO05D009833 2.5e-14 82.4 65 56.9
COL.COLO4_21276 Corchorus olitorius HOM05D007782 ORTHO05D009833 3.3e-14 82.0 58 60.3
Eucgr.E00835 Eucalyptus grandis HOM05D007782 ORTHO05D009833 4.3e-14 81.6 53 66.0
FAN04G1669 Fragaria x ananassa HOM05D007782 ORTHO05D009833 4.3e-14 81.6 55 65.5
FAN08G0568 Fragaria x ananassa HOM05D007782 ORTHO05D009833 4.3e-14 81.6 55 65.5
Sed0001446 Sechium edule HOM05D007782 ORTHO05D009833 7.3e-14 80.9 50 72.0
Nn1g01795 Nelumbo nucifera HOM05D007782 ORTHO05D009833 1.2e-13 80.1 61 60.7
CiPaw.12G085400 Carya illinoinensis HOM05D007782 ORTHO05D009833 1.6e-13 79.7 59 59.3
Peaxi162Scf00117g01316 Petunia axillaris HOM05D007782 ORTHO05D009833 1.6e-13 79.7 52 65.4
Psat7g027800 Pisum sativum HOM05D007782 ORTHO05D009833 1.6e-13 79.7 57 64.9
Actinidia27340 Actinidia chinensis HOM05D007782 ORTHO05D009833 2.1e-13 79.3 55 65.5
Migut.E01229 Erythranthe guttata HOM05D007782 ORTHO05D009833 2.1e-13 79.3 68 54.4
PGSC0003DMG400004987 Solanum tuberosum HOM05D007782 ORTHO05D009833 2.1e-13 79.3 49 67.3
Aqoxy7G00161 Aquilegia oxysepala HOM05D007782 ORTHO05D009833 4.7e-13 78.2 59 62.7
arahy.Tifrunner.gnm1.ann1.UB6WN3 Arachis hypogaea HOM05D007782 ORTHO05D009833 4.7e-13 78.2 50 68.0
arahy.Tifrunner.gnm1.ann1.WVD97E Arachis hypogaea HOM05D007782 ORTHO05D009833 4.7e-13 78.2 50 68.0
Ciclev10023213m.g Citrus clementina HOM05D007782 ORTHO05D009833 4.7e-13 78.2 56 60.7
Dinv37557 Davidia involucrata HOM05D007782 ORTHO05D009833 4.7e-13 78.2 50 70.0
HanXRQChr07g0191091 Helianthus annuus HOM05D007782 ORTHO05D009833 4.7e-13 78.2 62 56.5
Solyc12g056090.2 Solanum lycopersicum HOM05D007782 ORTHO05D009833 4.7e-13 78.2 49 65.3
Sopen12g028600 Solanum pennellii HOM05D007782 ORTHO05D009833 4.7e-13 78.2 49 65.3
Ca_17498_v3 Cicer arietinum L. HOM05D007782 ORTHO05D009833 8.1e-13 77.4 64 50.0
Atru.chr9.2057 Acer truncatum HOM05D007782 ORTHO05D009833 1.1e-12 77.0 68 54.4
Lj4g0009467 Lotus japonicus HOM05D007782 ORTHO05D009833 1.1e-12 77.0 64 51.6
Lalb_Chr09g0332651 Lupinus albus HOM05D007782 ORTHO05D009833 1.1e-12 77.0 49 65.3
DCAR_027723 Daucus carota HOM05D007782 ORTHO05D009833 1.4e-12 76.6 69 55.1
CDE10G0352 Ceratophyllum demersum HOM05D007782 ORTHO05D009833 1.8e-12 76.3 64 53.1
CDE10G0746 Ceratophyllum demersum HOM05D007782 ORTHO05D009833 2.3e-12 75.9 58 58.6
vmacro11447 Vaccinium macrocarpon HOM05D007782 ORTHO05D009833 2.3e-12 75.9 57 64.9
Lsat_1_v5_gn_6_11880 Lactuca sativa HOM05D007782 ORTHO05D009833 5.2e-12 74.7 52 61.5
Phvul.002G295900 Phaseolus vulgaris HOM05D007782 ORTHO05D009833 5.2e-12 74.7 56 55.4
TPR.G3446 Trifolium pratense HOM05D007782 ORTHO05D009833 5.2e-12 74.7 57 59.6
unitig_61.g26273 Utricularia gibba HOM05D007782 ORTHO05D009833 5.2e-12 74.7 58 51.7
PSO135G0862 Papaver somniferum HOM05D007782 ORTHO05D009833 1.2e-11 73.6 52 63.5
CAN.G2065.2 Capsicum annuum HOM05D007782 ORTHO05D009833 1.5e-11 73.2 47 61.7
Lalb_Chr05g0224281 Lupinus albus HOM05D007782 ORTHO05D009833 1.5e-11 73.2 55 56.4
Glyma.08G021000 Glycine max HOM05D007782 ORTHO05D009833 2.0e-11 72.8 56 53.6
SalBow8G2543 Salvia bowleyana HOM05D007782 ORTHO05D009833 2.0e-11 72.8 65 52.3
Glyma.05G214700 Glycine max HOM05D007782 ORTHO05D009833 9.9e-11 70.5 56 53.6
CAN.G98.14 Capsicum annuum HOM05D007782 ORTHO05D009833 1.7e-10 69.7 47 57.4
Nitab4.5_0002788g0030 Nicotiana tabacum HOM05D007782 ORTHO05D009833 2.9e-10 68.9 43 65.1
FAN18G3918 Fragaria x ananassa HOM05D007782 ORTHO05D009833 4.9e-10 68.2 45 64.4
ATR1093G039 Amborella trichopoda HOM05D007782 ORTHO05D009833 1.4e-09 66.6 53 50.9
MBI06_g22402_MAGBIO Magnolia biondii HOM05D007782 ORTHO05D009833 2.4e-09 65.9 51 58.8
Rhsim02G0240700 Rhododendron simsii HOM05D007782 ORTHO05D009833 3.2e-09 65.5 46 63.0
Medtr8g099240 Medicago truncatula HOM05D007782 ORTHO05D009833 5.4e-09 64.7 55 54.5
TWI81G1055 Tripterygium wilfordii HOM05D007782 ORTHO05D009833 5.4e-09 64.7 57 54.4
AagrBONN_evm.TU.Sc2ySwM_362.1714 Anthoceros agrestis HOM05D007782 ORTHO05D009833 7.1e-09 64.3 53 54.7
Os01g0224300 Oryza sativa ssp. japonica HOM05D007782 ORTHO05D009833 1.2e-08 63.5 46 56.5
Potri.001G094750 Populus trichocarpa HOM05D007782 ORTHO05D009833 2.1e-08 62.8 53 58.5
Duzib084G1198 Durio zibethinus HOM05D007782 ORTHO05D009833 3.5e-08 62.0 47 59.6
Mapoly0007s0070 Marchantia polymorpha HOM05D007782 ORTHO05D009833 5.1e-07 58.2 58 48.3


User provided reference genes

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