Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 6.9e-237 823.5 408 100.0
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.0e-224 781.6 408 95.3
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 7.0e-221 770.4 408 92.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.1e-202 709.9 411 87.8
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.0e-199 699.1 407 86.5
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-195 686.4 410 84.6
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.9e-195 685.3 411 84.4
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-193 679.9 411 83.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.7e-190 669.5 427 80.6
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 7.0e-189 664.1 416 82.0
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.0e-187 658.7 431 79.6
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 6.4e-182 641.0 411 79.6
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-179 633.6 411 81.5
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.3e-174 616.7 409 79.0
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 3.9e-171 605.1 409 78.2
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 3.9e-171 605.1 409 78.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.9e-170 602.8 413 73.1
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 5.8e-167 591.3 425 74.8
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.5e-162 575.9 389 78.1
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 7.3e-162 574.3 389 72.2
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 9.3e-149 530.8 417 66.4
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.1e-146 523.9 400 69.8
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.3e-145 520.4 414 64.7
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.1e-145 519.6 399 67.4
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.1e-144 517.3 409 67.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 5.3e-144 515.0 403 67.0
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 6.9e-144 514.6 404 66.8
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.2e-143 513.8 409 65.5
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 2.0e-143 513.1 403 65.8
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.7e-142 510.0 415 65.8
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 2.2e-142 509.6 401 65.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 3.8e-142 508.8 408 65.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.4e-142 507.7 408 66.2
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.9e-141 506.5 408 65.7
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.2e-141 505.8 308 79.2
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 4.2e-141 505.4 394 67.0
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 5.5e-141 505.0 308 78.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.1e-141 504.6 408 65.4
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 7.1e-141 504.6 408 65.2
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 9.3e-141 504.2 415 63.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.2e-140 503.8 407 65.4
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-140 503.4 415 64.8
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 4.6e-140 501.9 409 64.1
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.0e-139 500.7 339 73.7
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.3e-139 499.6 306 78.1
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.3e-139 499.6 415 64.3
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 3.0e-139 499.2 324 75.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.9e-139 498.8 410 64.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 8.7e-139 497.7 324 75.3
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 8.7e-139 497.7 305 78.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-138 496.9 410 64.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.9e-138 496.5 333 73.3
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.5e-138 496.1 408 65.0
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.3e-138 495.7 396 65.2
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 9.6e-138 494.2 295 80.0
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.6e-137 493.4 333 73.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 2.1e-137 493.0 382 67.0
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.7e-137 492.3 293 80.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 1.1e-136 490.7 333 73.0
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.1e-136 490.7 405 64.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.4e-136 490.3 399 65.4
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.4e-136 489.6 320 73.8
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 3.1e-136 489.2 322 73.6
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.0e-135 486.5 291 81.1
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.6e-135 486.1 400 64.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.7e-134 483.4 405 63.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.9e-134 482.6 407 62.2
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.8e-134 482.3 319 72.1
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.4e-134 481.1 390 65.1
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 9.3e-133 477.6 404 63.1
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.2e-132 477.2 403 64.0
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.7e-131 471.5 393 63.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 8.7e-131 471.1 396 64.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 8.7e-131 471.1 330 70.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 9.7e-130 467.6 300 81.7
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.8e-129 465.3 305 75.1
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 4.8e-129 465.3 300 75.7
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.4e-128 463.0 305 74.8
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.7e-126 456.8 306 71.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.5e-126 454.9 329 67.8
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.9e-125 453.4 274 79.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 7.2e-125 451.4 333 69.7
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.9e-123 445.7 292 71.6
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.2e-121 439.9 316 65.5
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 4.8e-121 438.7 272 75.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 6.9e-120 434.9 329 66.0
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.5e-119 433.7 425 56.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 2.6e-119 433.0 290 69.0
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.7e-118 430.3 337 63.2
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 2.9e-118 429.5 256 82.0
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.6e-116 423.7 370 59.7
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.1e-116 421.8 359 63.8
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.1e-116 421.8 359 63.8
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.1e-116 421.8 359 63.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 7.9e-116 421.4 310 67.1
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.8e-115 420.2 388 58.0
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.0e-115 419.5 354 63.3
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 2.6e-114 416.4 260 82.3
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.8e-113 412.9 291 66.0
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.5e-111 407.1 407 54.8
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.1e-109 401.0 240 80.0
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.5e-109 399.8 318 65.4
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 4.2e-109 399.1 314 62.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.2e-109 398.3 324 60.5
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.1e-108 396.7 236 82.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.4e-107 394.0 240 78.8
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.0e-107 392.9 326 59.8
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.0e-107 392.9 291 64.9
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.9e-107 392.5 423 55.1
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 3.9e-107 392.5 305 66.9
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 6.7e-107 391.7 258 76.4
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-105 387.1 413 54.7
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.7e-105 387.1 381 57.7
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 3.1e-104 382.9 360 61.1
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.3e-104 382.1 324 59.3
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.3e-102 377.5 339 60.2
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 6.3e-97 358.6 220 79.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.8e-96 357.1 405 50.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.3e-96 355.5 417 47.2
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 9.1e-96 354.8 279 65.2
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 3.8e-94 349.4 212 79.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 9.4e-93 344.7 392 51.8
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.7e-92 343.2 431 49.0
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.8e-91 340.5 211 79.1
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 8.8e-91 338.2 277 59.2
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.0e-90 337.0 282 59.6
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.5e-90 335.1 402 49.8
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 8.6e-86 321.6 301 54.5
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.3e-83 313.5 217 72.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-81 307.0 200 78.5
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.5e-77 293.5 200 68.5
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.6e-76 290.8 290 54.1
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.7e-73 280.8 210 66.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 2.0e-71 273.9 158 81.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.7e-70 270.8 292 52.4
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 3.9e-70 269.6 247 61.5
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.6e-70 268.9 282 55.3
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.5e-69 266.9 195 71.3
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-68 264.6 169 75.7
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.8e-67 260.8 172 75.0
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 3.1e-67 260.0 280 51.1
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.8e-67 258.8 280 51.1
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.7e-62 244.2 154 73.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 7.3e-61 238.8 288 42.4
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-59 235.0 170 65.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.0e-59 233.0 154 70.8
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 3.4e-58 229.9 199 62.3
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.0e-54 218.4 171 65.5
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.1e-53 214.9 256 51.2
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.5e-53 214.5 148 69.6
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.6e-52 211.1 239 47.7
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.6e-52 209.9 175 61.1
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.8e-51 205.7 151 64.2
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.2e-49 200.7 274 44.9
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 4.9e-49 199.5 133 72.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 8.1e-44 182.2 173 53.8
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.4e-43 180.6 180 50.6
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 5.3e-43 179.5 175 53.1
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.9e-40 171.0 195 51.8
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.0e-38 165.2 130 61.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.9e-37 161.0 402 34.3
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.4e-35 154.8 114 64.9
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.4e-35 154.1 113 69.0
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 4.0e-35 153.3 185 50.8
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 4.9e-25 119.8 129 45.7
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-24 118.6 81 71.6
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 4.6e-23 113.2 102 54.9
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.0e-23 112.8 69 79.7
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 3.9e-22 110.2 70 77.1
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.3e-17 95.1 162 40.7
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 5.0e-17 93.2 61 72.1
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 7.1e-16 89.4 172 39.5
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 9.3e-16 89.0 163 38.0
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 6.1e-15 86.3 160 40.6
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 3.9e-14 83.6 51 72.5
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 5.1e-14 83.2 52 80.8
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 8.7e-14 82.4 148 35.8
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.7e-13 79.7 150 36.7
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-12 77.8 56 67.9
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.1e-11 73.9 51 62.7
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 2.0e-10 71.2 43 83.7
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.9e-08 64.7 45 66.7
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.8e-06 58.2 41 73.2


User provided reference genes

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