Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.0e-73 278.5 148 100.0
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 2.2e-68 262.3 148 93.9
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.1e-64 250.0 148 89.2
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 2.2e-63 245.7 148 87.2
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-57 226.9 150 82.7
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 1.0e-57 226.9 150 83.3
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.0e-57 226.9 150 82.7
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 1.0e-57 226.9 150 83.3
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 4.0e-57 224.9 150 84.0
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 4.8e-55 218.0 150 81.3
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-54 216.9 148 80.4
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-54 216.9 148 80.4
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 7.0e-54 214.2 148 79.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 2.0e-53 212.6 148 79.1
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 4.5e-53 211.5 148 77.7
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 4.5e-53 211.5 148 77.7
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 4.5e-53 211.5 148 77.7
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.3e-47 193.4 158 68.4
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.2e-40 170.2 114 82.5
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.2e-39 166.0 128 66.4
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 6.3e-39 164.5 131 66.4
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 6.3e-39 164.5 125 68.0
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 8.3e-39 164.1 144 61.1
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.1e-38 163.7 138 63.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.4e-38 163.3 138 63.8
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.8e-38 162.9 125 68.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.8e-38 162.9 125 68.8
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.1e-38 162.2 140 62.9
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 3.1e-38 162.2 144 61.8
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 4.1e-38 161.8 123 66.7
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 5.4e-38 161.4 124 68.5
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 7.0e-38 161.0 132 65.2
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 9.2e-38 160.6 147 61.2
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.6e-37 159.8 126 69.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.6e-37 159.8 136 64.0
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 3.5e-37 158.7 156 62.8
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 3.5e-37 158.7 113 77.9
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 5.9e-37 157.9 146 61.0
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 7.8e-37 157.5 115 72.2
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 1.3e-36 156.8 113 72.6
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.3e-36 156.8 141 62.4
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.7e-36 156.4 135 63.0
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.7e-36 156.4 115 72.2
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 2.3e-36 156.0 117 69.2
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 3.8e-36 155.2 140 60.7
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 3.8e-36 155.2 128 64.8
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 8.6e-36 154.1 124 67.7
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.9e-35 152.9 118 67.8
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.9e-35 152.9 129 65.1
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 2.5e-35 152.5 142 56.3
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.5e-35 152.5 124 66.9
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.3e-35 152.1 135 58.5
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.3e-35 152.1 143 61.5
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 3.3e-35 152.1 118 66.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.3e-35 152.1 127 66.1
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 4.3e-35 151.8 137 60.6
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 5.6e-35 151.4 129 65.1
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.2e-34 150.2 127 63.8
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 2.1e-34 149.4 111 67.6
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 3.6e-34 148.7 117 68.4
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 4.7e-34 148.3 155 53.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 4.7e-34 148.3 155 53.5
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 6.1e-34 147.9 121 63.6
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 6.1e-34 147.9 122 63.9
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 8.0e-34 147.5 119 65.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 3.0e-33 145.6 118 64.4
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 3.0e-33 145.6 112 67.0
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 6.8e-33 144.4 124 63.7
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.5e-32 143.3 150 55.3
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 2.0e-32 142.9 109 67.9
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.4e-32 141.7 122 63.1
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 9.8e-32 140.6 108 64.8
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.2e-31 139.4 114 64.9
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.2e-31 139.4 137 55.5
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.1e-30 137.1 93 77.4
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.4e-30 136.7 106 66.0
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.4e-30 136.7 150 52.7
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.4e-30 136.0 105 63.8
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 4.1e-30 135.2 141 53.9
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 5.4e-30 134.8 101 67.3
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 9.2e-30 134.0 111 62.2
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.7e-29 132.5 140 52.9
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 6.0e-29 131.3 110 65.5
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 1.0e-28 130.6 101 68.3
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.3e-28 129.4 93 71.0
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.3e-28 129.4 99 68.7
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 2.3e-28 129.4 102 68.6
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 3.0e-28 129.0 106 65.1
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 5.0e-28 128.3 114 59.6
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.0e-28 128.3 99 67.7
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 8.6e-28 127.5 104 65.4
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.6e-28 127.5 91 71.4
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.9e-27 126.3 109 57.8
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 2.5e-27 125.9 68 89.7
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.1e-26 122.9 99 65.7
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 3.6e-26 122.1 109 62.4
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 6.2e-26 121.3 93 62.4
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 6.2e-26 121.3 93 62.4
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.3e-25 119.4 110 53.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.3e-25 119.4 105 58.1
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 6.8e-25 117.9 137 49.6
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.2e-24 117.1 90 65.6
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.0e-24 116.3 91 63.7
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.6e-24 115.9 115 51.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.4e-22 110.2 107 55.1
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.9e-22 109.8 87 65.5
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.2e-22 109.0 143 46.2
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.9e-20 102.1 79 60.8
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 3.9e-20 102.1 86 55.8
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 6.6e-20 101.3 91 68.1
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 6.6e-20 101.3 149 40.3
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 9.5e-19 97.4 72 79.2
AL8G12210 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 9.5e-19 97.4 72 79.2
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.8e-18 95.9 76 65.8
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 3.6e-18 95.5 135 39.3
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 6.2e-18 94.7 79 57.0
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 4.4e-16 88.6 84 51.2
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 7.5e-16 87.8 68 67.6
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 9.9e-16 87.4 68 67.6
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.7e-15 86.7 117 47.0
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 8.3e-15 84.3 56 75.0
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 1.2e-13 80.5 78 59.0
BcaB04g19162 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-13 79.3 75 68.0
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.5e-13 79.0 68 63.2
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.0e-12 77.4 98 50.0
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.0e-12 77.4 67 55.2
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.0e-12 77.4 67 55.2
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 6.6e-12 74.7 114 42.1
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 8.6e-12 74.3 66 60.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.9e-11 73.2 62 59.7
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 5.2e-09 65.1 43 72.1
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-07 60.5 75 53.3
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-07 60.5 75 53.3
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 1.7e-07 60.1 88 40.9
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 4.9e-07 58.5 75 52.0
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 8.4e-07 57.8 46 60.9
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 8.4e-07 57.8 46 60.9
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.9e-06 56.6 75 50.7


User provided reference genes

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