Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 3.7e-149 531.6 274 100.0
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 1.0e-138 496.9 274 93.8
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 4.6e-136 488.0 274 92.0
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 3.4e-131 471.9 275 89.5
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 6.7e-127 457.6 277 85.6
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 6.7e-127 457.6 277 85.6
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 1.1e-126 456.8 277 85.2
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 4.4e-126 454.9 277 85.9
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 2.4e-124 449.1 277 84.8
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 4.1e-124 448.4 271 85.2
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 6.9e-124 447.6 277 84.5
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 5.5e-113 411.4 285 77.5
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 3.0e-95 352.4 275 68.7
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 2.8e-72 276.2 274 54.4
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 7.5e-70 268.1 284 53.5
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 5.4e-68 261.9 283 53.0
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 1.7e-66 256.9 278 50.4
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 2.3e-66 256.5 276 51.1
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 5.1e-66 255.4 273 51.3
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 6.8e-63 245.0 272 51.8
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 6.8e-63 245.0 277 47.7
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 8.9e-63 244.6 277 48.7
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 2.0e-62 243.4 266 52.6
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 4.4e-62 242.3 266 52.6
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 7.6e-62 241.5 271 48.7
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 7.6e-62 241.5 266 53.0
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 8.4e-61 238.0 268 48.5
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 1.1e-57 227.6 267 47.2
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 2.5e-57 226.5 283 47.3
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 4.3e-57 225.7 266 47.7
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 7.3e-57 224.9 267 47.6
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 9.6e-57 224.6 267 46.8
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 2.1e-56 223.4 277 45.8
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 3.1e-55 219.5 267 46.8
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 4.0e-55 219.2 265 46.8
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 3.4e-54 216.1 261 47.5
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 3.4e-54 216.1 270 46.7
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 7.6e-54 214.9 268 46.6
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 7.6e-54 214.9 268 46.6
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 2.2e-53 213.4 264 46.6
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 2.2e-53 213.4 268 46.6
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 2.9e-53 213.0 268 46.6
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 4.9e-53 212.2 266 46.2
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 3.5e-51 206.1 276 44.2
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 3.9e-50 202.6 222 49.5
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 1.5e-49 200.7 265 43.8
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 1.9e-49 200.3 269 40.9
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 2.5e-49 199.9 277 44.0
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 5.6e-49 198.7 265 42.6
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 5.6e-49 198.7 233 45.5
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 7.3e-49 198.4 272 42.3
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 1.3e-48 197.6 299 42.1
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.3e-48 197.6 238 48.7
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 2.8e-48 196.4 277 44.4
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 8.1e-48 194.9 271 42.8
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 2.4e-47 193.4 285 42.1
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 2.4e-47 193.4 285 42.1
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 2.4e-47 193.4 289 41.5
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 2.4e-47 193.4 236 48.3
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 2.4e-47 193.4 233 45.9
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.5e-46 190.7 267 44.2
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 2.6e-46 189.9 270 38.9
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 4.5e-46 189.1 267 41.9
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 5.8e-46 188.7 261 46.4
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 7.6e-46 188.3 265 41.1
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 2.9e-45 186.4 261 39.5
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 3.8e-45 186.0 265 40.0
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 6.4e-45 185.3 216 50.0
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.4e-44 184.1 220 47.3
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 2.1e-43 180.3 259 45.9
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 3.5e-43 179.5 259 47.5
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 6.7e-42 175.3 264 39.8
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 1.1e-41 174.5 287 37.6
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 1.5e-41 174.1 258 42.2
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 5.6e-41 172.2 265 38.9
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 1.8e-39 167.2 185 49.7
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 2.4e-39 166.8 251 40.6
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 2.4e-39 166.8 291 37.8
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 1.2e-38 164.5 259 43.2
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 1.2e-38 164.5 261 40.6
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 1.2e-38 164.5 261 40.6
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 1.2e-38 164.5 262 41.6
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 1.2e-38 164.5 261 40.2
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 2.6e-38 163.3 262 40.8
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 3.4e-38 162.9 263 41.4
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 5.8e-38 162.2 262 40.8
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 1.7e-37 160.6 261 40.6
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 1.7e-37 160.6 268 42.5
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 2.9e-37 159.8 262 40.1
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.9e-37 159.8 280 36.4
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 2.7e-35 153.3 262 37.4
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 3.5e-35 152.9 238 40.3
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 1.8e-34 150.6 257 39.3
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 3.0e-34 149.8 271 36.2
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 3.9e-34 149.4 262 38.5
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 1.9e-33 147.1 262 35.1
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 1.9e-33 147.1 262 35.1
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 2.5e-33 146.7 262 34.7
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 2.5e-33 146.7 262 34.7
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 1.6e-32 144.1 262 35.1
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 6.9e-31 138.7 266 34.6
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 8.7e-26 121.7 124 53.2
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 3.1e-23 113.2 259 31.3
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.0e-21 108.2 127 44.1
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 1.2e-19 101.3 263 28.9
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 8.5e-13 78.6 119 37.8
BcaC04g23386 Brassica carinata HOM05D058362 ORTHO05D039412 1.1e-12 78.2 109 42.2
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.1e-12 78.2 65 50.8
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 9.4e-12 75.1 135 34.8
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 9.4e-12 75.1 119 41.2
AL7G31000 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 3.6e-11 73.2 113 44.2
A09p07920 Brassica napus HOM05D006860 ORTHO05D098945 1.1e-09 68.2 108 33.3
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 7.4e-09 65.5 66 51.5
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 7.4e-09 65.5 56 55.4
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 4.8e-08 62.8 51 56.9
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 4.8e-08 62.8 250 24.8
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 5.3e-07 59.3 51 52.9
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 5.3e-07 59.3 55 49.1
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 9.1e-07 58.5 60 51.7


User provided reference genes

Program Settings