Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 8.4e-131 470.7 300 100.0
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 3.4e-100 369.0 314 78.0
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 3.9e-88 328.9 304 67.1
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 1.4e-80 303.9 309 69.6
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.0e-76 290.0 301 63.5
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 2.7e-76 289.7 301 58.8
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 5.9e-76 288.5 306 61.4
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 5.9e-76 288.5 306 61.8
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 5.0e-75 285.4 306 61.1
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 1.7e-54 217.2 131 92.4
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 1.7e-54 217.2 301 45.5
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 4.7e-49 199.1 131 76.3
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 4.4e-39 166.0 166 49.4
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 1.3e-38 164.5 147 59.2
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 2.9e-38 163.3 166 50.0
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 3.7e-38 162.9 180 43.9
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 6.4e-38 162.2 183 44.3
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 8.3e-38 161.8 177 46.9
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.9e-37 160.6 169 47.3
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 5.4e-37 159.1 178 47.2
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 1.2e-36 157.9 166 47.6
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 4.6e-36 156.0 164 46.3
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 6.0e-36 155.6 166 47.6
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.3e-35 154.5 183 42.6
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 3.0e-35 153.3 166 47.6
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 8.6e-35 151.8 178 42.7
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.1e-34 151.4 169 47.9
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.1e-34 151.4 169 43.2
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.5e-34 151.0 163 44.8
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 3.3e-34 149.8 166 44.0
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 5.6e-34 149.1 163 44.8
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 5.6e-34 149.1 163 44.8
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 5.6e-34 149.1 167 45.5
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 7.3e-34 148.7 166 45.8
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 7.3e-34 148.7 154 49.4
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 4.7e-33 146.0 183 43.2
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.1e-32 144.8 168 41.7
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.4e-32 144.4 156 47.4
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 1.4e-32 144.4 167 44.9
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 1.8e-32 144.1 162 45.1
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 3.1e-32 143.3 162 44.4
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 4.0e-32 142.9 198 37.9
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 6.8e-32 142.1 166 42.8
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 3.4e-31 139.8 140 46.4
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 7.6e-31 138.7 164 42.7
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.1e-29 134.8 161 44.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.1e-29 134.8 161 44.1
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 5.4e-29 132.5 182 40.1
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 7.1e-29 132.1 156 43.6
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 7.8e-28 128.6 166 41.6
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 1.0e-27 128.3 158 41.1
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 2.3e-27 127.1 113 53.1
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 5.1e-27 125.9 167 39.5
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.1e-26 124.8 166 41.0
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 1.1e-26 124.8 166 40.4
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 9.6e-26 121.7 158 40.5
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.6e-25 120.9 158 39.9
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 4.7e-25 119.4 133 45.9
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 1.1e-24 118.2 166 41.0
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 2.0e-23 114.0 171 38.6
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 2.6e-23 113.6 174 36.8
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 2.6e-23 113.6 111 46.8
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 2.6e-23 113.6 123 44.7
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 5.8e-23 112.5 123 44.7
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 7.6e-23 112.1 125 44.0
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 2.2e-22 110.5 170 35.3
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 2.2e-22 110.5 134 39.6
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.9e-21 107.5 178 36.5
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 7.1e-21 105.5 166 33.7
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 7.1e-21 105.5 136 40.4
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 2.1e-20 104.0 124 45.2
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 2.7e-20 103.6 151 36.4
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.1e-16 91.7 183 33.3
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 7.6e-15 85.5 150 33.3
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 1.2e-12 78.2 153 30.7
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 1.3e-11 74.7 105 37.1
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 1.9e-10 70.9 103 37.9
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.8e-08 64.3 100 39.0
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.2e-07 61.6 125 32.0
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 2.6e-07 60.5 143 30.1
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 3.4e-07 60.1 105 33.3
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 7.6e-07 58.9 54 44.4
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 9.9e-07 58.5 91 35.2
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 3.8e-06 56.6 102 30.4
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 6.4e-06 55.8 102 30.4
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 8.4e-06 55.5 102 30.4


User provided reference genes

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