Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 6.3e-186 654.1 352 100.0
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.8e-177 625.9 352 89.5
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 1.6e-173 612.8 352 87.2
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 6.3e-170 600.9 350 87.7
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 3.7e-162 575.1 350 84.3
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 9.4e-158 560.5 350 82.3
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 1.7e-154 549.7 351 79.5
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 5.0e-151 538.1 351 78.3
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.5e-150 536.6 351 78.1
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.2e-149 533.5 351 77.8
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 6.1e-149 531.2 390 72.8
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.4e-145 520.0 341 78.0
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.5e-144 515.4 341 77.4
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 3.9e-143 511.9 353 72.8
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 8.6e-127 457.6 346 66.5
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 1.1e-126 457.2 284 77.5
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.3e-126 455.7 346 67.1
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 3.3e-126 455.7 286 78.3
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 5.6e-126 454.9 283 78.4
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 5.6e-126 454.9 283 78.4
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 7.3e-126 454.5 283 77.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 1.6e-125 453.4 285 77.5
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 1.6e-125 453.4 341 66.9
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.1e-125 453.0 288 77.1
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 3.6e-125 452.2 277 78.0
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 3.6e-125 452.2 293 75.1
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 4.7e-125 451.8 285 76.8
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.2e-125 451.4 285 75.8
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 6.2e-125 451.4 284 76.1
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 1.1e-124 450.7 283 77.4
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.8e-124 449.9 288 76.4
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 3.1e-124 449.1 288 75.3
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 5.2e-124 448.4 285 76.1
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 6.8e-124 448.0 286 75.9
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 8.9e-124 447.6 286 73.8
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 8.9e-124 447.6 285 75.4
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.2e-123 447.2 283 77.0
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.2e-123 447.2 292 75.0
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.5e-123 446.8 285 75.4
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.5e-123 446.8 286 76.9
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.5e-123 446.8 283 76.3
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.0e-123 446.4 286 75.2
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 2.0e-123 446.4 259 81.5
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.0e-123 446.4 285 76.1
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.0e-123 446.4 292 75.0
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.0e-123 446.4 259 81.5
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 2.6e-123 446.0 288 75.7
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 4.4e-123 445.3 283 77.4
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 4.4e-123 445.3 258 81.4
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 1.3e-122 443.7 289 75.1
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.7e-122 443.4 281 76.5
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.9e-122 442.6 293 73.4
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 6.4e-122 441.4 283 74.2
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.4e-121 440.3 284 75.7
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.4e-121 440.3 289 74.0
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.9e-121 439.9 366 62.8
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 1.9e-121 439.9 261 78.9
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.9e-121 439.9 263 77.9
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 2.4e-121 439.5 357 63.6
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.2e-121 439.1 337 66.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 3.2e-121 439.1 351 64.4
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 3.2e-121 439.1 287 74.9
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 3.2e-121 439.1 286 73.4
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 4.1e-121 438.7 277 75.8
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.2e-120 437.2 284 73.6
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.2e-120 437.2 267 77.2
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.7e-120 436.0 285 75.4
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.0e-119 434.1 284 73.9
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.0e-119 434.1 297 72.4
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.7e-119 433.3 287 74.2
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.7e-119 433.3 290 71.4
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 3.9e-119 432.2 285 74.0
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 5.1e-119 431.8 285 74.4
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.6e-119 431.4 352 64.8
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 1.5e-118 430.3 311 68.2
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.5e-118 430.3 291 72.2
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 2.5e-118 429.5 275 76.0
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 3.3e-118 429.1 260 77.7
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 2.1e-117 426.4 261 77.4
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.8e-116 423.3 283 71.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.2e-115 420.6 277 74.0
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.6e-115 419.5 287 71.8
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.6e-115 419.5 286 71.7
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 4.4e-115 418.7 332 65.1
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.9e-114 416.0 270 73.3
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 2.4e-113 412.9 272 73.2
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.2e-112 410.6 281 71.2
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 7.8e-112 407.9 289 70.2
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 3.9e-111 405.6 284 70.8
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 5.6e-110 401.7 228 82.9
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 5.3e-108 395.2 286 68.2
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 2.6e-107 392.9 279 70.3
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 5.8e-107 391.7 289 67.8
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.9e-105 386.7 289 66.1
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 3.0e-103 379.4 303 63.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 6.6e-103 378.3 335 59.7
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 8.7e-103 377.9 258 69.8
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.9e-102 376.7 305 63.0
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.6e-101 373.6 285 68.1
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.6e-101 372.5 293 61.8
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 6.2e-101 371.7 283 66.4
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.2e-99 367.5 264 65.9
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 4.5e-99 365.5 345 57.7
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.0e-96 355.1 250 67.2
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 6.0e-96 355.1 282 63.8
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-95 354.0 306 59.8
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 4.8e-93 345.5 216 73.1
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.4e-92 344.0 212 76.9
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 6.3e-85 318.5 181 80.7
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.1e-80 303.5 258 60.5
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.6e-77 293.9 216 69.0
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.1e-71 272.3 216 61.1
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 8.8e-71 271.6 283 50.9
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 7.4e-70 268.5 205 65.4
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.8e-68 263.8 285 51.6
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 4.7e-64 249.2 170 71.8
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.1e-62 244.6 207 55.6
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.7e-61 240.7 201 55.7
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.7e-61 239.6 231 57.1
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.8e-60 237.3 162 73.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.0e-59 233.8 232 51.3
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.6e-59 233.4 200 54.5
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.9e-59 232.3 192 56.8
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.6e-56 223.0 195 54.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.2e-50 203.8 190 53.2
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.4e-46 189.5 286 41.3
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 7.5e-46 188.7 111 80.2
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 7.5e-38 162.2 116 68.1
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 8.3e-37 158.7 141 53.2
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 5.9e-35 152.5 100 69.0
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 7.7e-35 152.1 108 64.8
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.7e-34 151.0 103 67.0
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 3.6e-32 143.3 117 64.1
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 8.0e-32 142.1 273 38.5
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 2.4e-28 130.6 68 86.8
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 3.5e-27 126.7 109 60.6
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 4.3e-25 119.8 103 63.1
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 8.3e-21 105.5 71 73.2
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.1e-15 88.6 65 58.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 1.4e-15 88.2 84 60.7
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 8.9e-15 85.5 84 58.3
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 2.9e-13 80.5 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 1.4e-12 78.2 81 49.4
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 7.1e-12 75.9 180 30.6
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 9.2e-12 75.5 191 29.3
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.0e-10 72.0 191 28.8
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 1.7e-10 71.2 216 28.2
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 3.9e-10 70.1 180 28.9
vmacro00077 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 3.9e-10 70.1 199 28.1
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 5.1e-10 69.7 180 29.4
Pp3c2_12680 Physcomitrium patens HOM05D001659 ORTHO05D001659 8.6e-10 68.9 220 25.9
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.1e-09 68.6 52 67.3
FvH4_4g05930 Fragaria vesca HOM05D001659 ORTHO05D001659 1.9e-09 67.8 185 29.2
FAN12G0150 Fragaria x ananassa HOM05D001659 ORTHO05D001659 1.9e-09 67.8 185 29.2
FAN17G3134 Fragaria x ananassa HOM05D001659 ORTHO05D001659 1.9e-09 67.8 185 29.2
Mapoly0009s0095 Marchantia polymorpha HOM05D001659 ORTHO05D001659 1.9e-09 67.8 180 27.8
CDE04G3729 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 5.6e-09 66.2 180 27.8
Aa31LG2G13660 Aethionema arabicum HOM05D001659 ORTHO05D001659 9.5e-09 65.5 191 27.7
HanXRQChr03g0081111 Helianthus annuus HOM05D001659 ORTHO05D001659 1.1e-07 62.0 180 26.1
HanXRQChr03g0081321 Helianthus annuus HOM05D001659 ORTHO05D001659 1.1e-07 62.0 180 26.1
HanXRQChr13g0411111 Helianthus annuus HOM05D001659 ORTHO05D001659 2.3e-07 60.8 180 26.1
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.2e-06 58.5 195 26.2
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.4e-06 57.0 53 54.7


User provided reference genes

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