Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.0e-60 234.6 118 100.0
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 3.9e-47 191.4 120 83.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.0e-43 179.1 118 76.3
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.7e-42 174.9 118 74.6
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.4e-41 172.9 118 73.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.9e-41 172.6 118 73.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.9e-41 172.6 118 73.7
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.9e-41 172.6 118 73.7
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.2e-41 170.2 118 72.9
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 7.8e-40 167.2 119 73.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.4e-28 129.8 79 84.8
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.4e-25 119.8 119 58.0
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.2e-25 118.6 121 58.7
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.3e-25 117.1 123 56.9
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 2.7e-24 115.5 122 57.4
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.6e-24 114.8 122 59.0
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 6.6e-23 110.9 114 56.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 6.6e-23 110.9 114 56.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-22 110.2 114 55.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.1e-22 110.2 114 55.3
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 9.6e-22 107.1 115 57.4
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 2.6e-19 99.0 119 50.4
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.6e-19 99.0 119 48.7
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.6e-19 99.0 119 48.7
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.6e-19 99.0 119 48.7
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 7.6e-19 97.4 122 51.6
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 7.6e-19 97.4 122 51.6
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.9e-18 95.5 129 51.9
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.4e-17 92.4 120 47.5
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.0e-11 72.8 93 48.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 1.3e-10 70.1 121 37.2
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.2e-10 69.3 123 35.8
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 6.4e-10 67.8 105 40.0
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 8.4e-10 67.4 119 36.1
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.9e-09 66.2 103 38.8
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.4e-09 65.9 79 43.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.4e-09 65.9 79 43.0
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 3.2e-09 65.5 120 40.8
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.2e-09 65.5 119 35.3
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 5.5e-09 64.7 119 36.1
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 7.1e-09 64.3 120 38.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 9.3e-09 63.9 119 35.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 119 34.5
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.2e-08 63.5 119 34.5
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.6e-08 63.2 119 37.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.1e-08 62.8 75 42.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.1e-08 62.8 79 41.8
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.7e-08 62.4 75 42.7
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.7e-08 62.4 100 38.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.7e-08 62.4 104 35.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.5e-08 62.0 118 34.7
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.5e-08 62.0 111 36.9
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 4.6e-08 61.6 114 33.3
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 4.6e-08 61.6 115 37.4
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 4.6e-08 61.6 79 40.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.6e-08 61.6 104 39.4
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.6e-08 61.6 104 39.4
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 6.0e-08 61.2 119 34.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 6.0e-08 61.2 122 36.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.0e-08 61.2 77 41.6
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 7.9e-08 60.8 122 32.0
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 7.9e-08 60.8 122 32.0
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.9e-08 60.8 116 33.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 7.9e-08 60.8 104 37.5
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-07 60.5 119 32.8
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.1 119 33.6
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 120 30.8
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 103 36.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-07 59.3 119 31.9
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 3.0e-07 58.9 122 33.6
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.0e-07 58.9 118 34.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.0e-07 58.9 75 42.7
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 3.9e-07 58.5 122 32.0
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 3.9e-07 58.5 121 32.2
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 3.9e-07 58.5 121 32.2
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.9e-07 58.5 95 32.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 3.9e-07 58.5 117 30.8
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.9e-07 58.5 76 40.8
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.1e-07 58.2 96 39.6
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 5.1e-07 58.2 80 41.2
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 6.7e-07 57.8 75 40.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 6.7e-07 57.8 79 43.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 6.7e-07 57.8 79 40.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 6.7e-07 57.8 101 38.6
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 8.7e-07 57.4 79 38.0
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.7e-07 57.4 98 39.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.7e-07 57.4 98 38.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 1.1e-06 57.0 79 38.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.1e-06 57.0 89 39.3
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.1e-06 57.0 81 40.7
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.5e-06 56.6 89 36.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.5e-06 56.6 104 33.7
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.9e-06 56.2 66 47.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.9e-06 56.2 76 40.8
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.9e-06 56.2 70 44.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.9e-06 56.2 75 38.7
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 2.5e-06 55.8 78 37.2
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-06 55.8 80 38.8
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 2.5e-06 55.8 79 38.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-06 55.5 75 41.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.3e-06 55.5 76 39.5
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.3e-06 55.5 79 40.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.3e-06 55.1 79 38.0
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.3e-06 55.1 78 39.7
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 5.6e-06 54.7 78 37.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 39.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.4e-06 54.3 75 41.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.4e-06 54.3 80 38.8
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 9.6e-06 53.9 77 39.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.6e-06 53.9 95 32.6
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.6e-06 53.9 95 32.6
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 9.6e-06 53.9 108 36.1


User provided reference genes

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