Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 2376.7 1279 100.0
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 2073.9 1283 88.6
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 2070.4 1282 86.5
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1961.8 1341 79.8
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1949.9 1367 78.3
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 0.0e+00 1947.6 1118 94.2
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1945.2 1358 78.7
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1941.0 1343 77.3
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1923.7 1327 80.6
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 0.0e+00 1907.5 1293 82.3
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1895.2 1344 79.2
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 0.0e+00 1866.7 1284 80.9
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 0.0e+00 1655.6 1369 69.9
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1523.8 1455 62.2
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1209.9 1449 51.8
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1200.7 1404 52.1
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1192.2 1390 49.2
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1178.3 1428 48.6
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1173.3 1353 51.4
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1169.8 1286 54.9
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1164.1 1394 50.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1431 50.3
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1151.0 1353 50.6
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1149.0 1496 46.7
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1535 47.4
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1143.3 1543 46.0
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1142.5 1379 51.3
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1129.8 1515 47.0
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1127.9 1549 46.1
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1125.2 1347 50.0
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1115.9 1393 50.5
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1328 50.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1114.4 1394 49.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1106.3 1528 45.5
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1105.9 1411 48.1
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1099.3 1441 49.1
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1096.6 1383 50.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1085.9 1367 50.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1085.1 1295 50.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1076.2 1487 44.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1075.5 1512 44.6
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 2.6e-311 1072.4 1360 48.5
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 4.4e-311 1071.6 1501 45.0
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 1.0e-310 1070.5 1372 47.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 5.1e-310 1068.1 1373 47.7
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 1.5e-309 1066.6 1510 46.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 7.3e-309 1064.3 1398 48.9
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 1.2e-308 1063.5 1358 48.7
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 1.6e-308 1063.1 1392 46.8
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 4.0e-307 1058.5 1414 49.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.5e-306 1056.6 1468 45.1
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 1.3e-305 1053.5 1354 48.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 8.4e-305 1050.8 1374 47.5
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 1.4e-304 1050.0 1372 46.8
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 4.6e-303 1045.0 1383 47.7
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 6.0e-303 1044.6 1382 47.7
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 3.6e-300 1035.4 1539 43.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 4.4e-298 1028.5 1384 47.0
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 1.3e-297 1026.9 1483 44.0
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 2.2e-297 1026.2 1508 43.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 4.9e-297 1025.0 1326 49.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 5.4e-296 1021.5 1570 41.8
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 5.4e-296 1021.5 1435 46.6
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 2.1e-292 1009.6 1563 41.3
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 7.6e-290 1001.1 1512 43.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 7.6e-290 1001.1 1545 43.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 9.9e-290 1000.7 1385 45.9
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.9e-288 996.5 1336 47.5
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 4.2e-288 995.3 1409 46.3
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 3.5e-287 992.3 1506 45.0
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.4e-280 970.3 1515 42.6
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 7.1e-280 968.0 1602 41.0
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.0e-279 964.9 922 57.4
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.5e-277 959.5 1806 38.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.4e-275 953.7 1561 41.0
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.2e-272 942.2 1460 44.2
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.7e-271 939.5 1363 47.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.7e-270 934.9 1283 46.1
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.6e-268 930.2 1286 44.9
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.8e-267 926.8 1342 45.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.4e-266 922.5 1283 45.8
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.8e-260 902.9 1049 50.8
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-259 901.0 1458 44.3
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.0e-254 882.9 1500 40.1
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.8e-252 875.5 758 61.7
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.0e-242 843.6 922 51.8
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 4.0e-238 829.3 914 51.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 9.1e-235 818.1 1331 43.1
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 4.0e-222 776.2 1285 43.0
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.2e-207 728.0 1242 42.4
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 5.8e-205 719.2 787 51.5
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 6.8e-198 695.7 1293 39.1
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 9.6e-192 675.2 1306 36.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.4e-187 661.4 2359 27.4
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.6e-186 657.9 1087 39.3
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.9e-180 637.1 546 61.5
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.4e-171 607.4 1280 37.1
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.8e-167 594.0 1457 32.5
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.3e-156 558.5 728 45.3
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.3e-153 547.7 827 45.6
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.8e-151 540.8 884 39.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.7e-127 460.7 1323 30.2
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 5.9e-125 453.4 438 57.1
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.2e-122 445.7 1176 33.8
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.6e-107 393.7 555 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.6e-106 392.1 1376 28.6
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.0e-100 371.3 478 43.1
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 7.3e-99 366.7 1532 24.4
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.5e-96 359.0 503 40.2
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 7.5e-96 356.7 1430 27.5
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.3e-91 341.3 326 60.4
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 8.1e-82 310.1 407 50.9
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-81 308.9 489 44.8
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-79 302.4 290 51.0
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.1e-73 283.1 326 53.1
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.7e-68 265.8 330 47.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 3.1e-57 228.4 224 57.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.0e-56 225.7 235 52.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.3e-51 208.0 150 69.3
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-48 199.5 708 28.2
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 6.0e-45 187.6 102 97.1
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.9e-44 184.9 281 41.3
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-43 180.6 697 25.4
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.6e-40 172.2 553 27.3
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.5e-40 171.4 151 62.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.5e-39 167.2 417 43.4
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 3.6e-37 161.8 126 67.5
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.2e-31 142.5 389 29.0
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 2.9e-31 142.1 152 53.9
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.0e-28 132.1 207 39.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.6e-27 129.0 610 24.3
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 7.4e-27 127.5 350 27.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 5.0e-23 114.8 102 56.9
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.5e-19 103.2 181 38.1
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 2.6e-19 102.4 74 64.9
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 8.0e-13 80.9 374 25.4
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.3e-12 79.3 102 51.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 5.2e-12 78.2 239 26.4
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.3e-11 75.5 80 56.2
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.3e-10 73.6 165 30.3
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 5.3e-09 68.2 52 63.5
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.1e-09 67.4 70 50.0
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.1e-06 60.5 230 23.9


User provided reference genes

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