Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 2.1e-69 265.8 157 100.0
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 7.4e-62 240.7 157 93.6
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 1.4e-44 183.3 156 77.6
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.7e-42 176.4 152 64.5
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 2.2e-42 176.0 152 66.4
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 2.9e-42 175.6 152 68.4
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 6.5e-42 174.5 152 80.9
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 8.5e-42 174.1 152 82.2
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.0e-39 167.2 148 62.8
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 3.0e-39 165.6 140 85.0
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 2.6e-38 162.5 139 62.6
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 4.4e-38 161.8 153 62.7
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 9.7e-38 160.6 147 63.3
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 9.7e-38 160.6 147 63.3
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 2.0e-35 152.9 152 74.3
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 8.5e-34 147.5 152 75.0
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 8.5e-34 147.5 152 75.0
BcaC09g51211 Brassica carinata HOM05D005932 ORTHO05D006213 5.5e-25 118.2 152 67.8
C01p15720 Brassica napus HOM05D005932 ORTHO05D006213 5.5e-25 118.2 152 67.8
BolC1t01525H Brassica oleracea HOM05D005932 ORTHO05D006213 5.5e-25 118.2 152 67.8
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 1.5e-22 110.2 121 68.6
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 8.0e-16 87.8 57 78.9
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.7e-14 81.6 148 44.6
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.3e-13 80.5 151 37.1
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.3e-13 80.5 156 39.7
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 1.7e-13 80.1 135 37.8
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.7e-13 80.1 148 43.9
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 4.1e-12 75.5 143 35.0
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 7.0e-12 74.7 130 39.2
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.6e-11 73.6 138 37.7
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 2.7e-11 72.8 155 34.2
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 7.8e-11 71.2 136 37.5
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.0e-10 70.9 138 44.2
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 1.3e-10 70.5 145 50.3
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 1.7e-10 70.1 133 41.4
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 1.1e-09 67.4 124 39.5
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 1.5e-09 67.0 131 34.4
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 1.5e-09 67.0 156 34.0
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 2.5e-09 66.2 157 46.5
AL1G44550 Arabidopsis lyrata HOM05D012212 ORTHO05D006213 2.5e-09 66.2 135 43.7
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 3.3e-09 65.9 142 44.4
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 5.6e-09 65.1 123 34.1
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 7.3e-09 64.7 143 38.5
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 9.5e-09 64.3 138 34.1
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 9.5e-09 64.3 124 46.0
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.2e-08 63.9 135 34.1
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 1.2e-08 63.9 126 32.5
Sp1g26360 Schrenkiella parvula HOM05D012212 ORTHO05D006213 1.2e-08 63.9 131 37.4
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 1.2e-08 63.9 120 38.3
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 1.6e-08 63.5 141 31.9
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.6e-08 63.5 133 36.1
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.6e-08 63.5 118 37.3
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 2.8e-08 62.8 120 38.3
AT1G30515 Arabidopsis thaliana HOM05D012212 ORTHO05D006213 3.6e-08 62.4 136 47.8
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 3.6e-08 62.4 135 38.5
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 4.7e-08 62.0 136 32.4
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 4.7e-08 62.0 125 35.2
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 6.1e-08 61.6 122 36.1
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 6.1e-08 61.6 148 34.5
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 8.0e-08 61.2 114 53.5
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 1.0e-07 60.8 135 31.1
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.0e-07 60.8 159 32.1
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.4e-07 60.5 132 31.8
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 1.4e-07 60.5 144 31.9
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 1.4e-07 60.5 128 32.8
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.8e-07 60.1 137 33.6
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 1.8e-07 60.1 134 32.1
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 2.3e-07 59.7 135 31.9
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 4.0e-07 58.9 126 34.9
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 4.0e-07 58.9 132 34.1
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 4.0e-07 58.9 116 36.2
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.0e-07 58.9 132 33.3
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 4.0e-07 58.9 133 31.6
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 5.2e-07 58.5 137 41.6
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 5.2e-07 58.5 118 38.1
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 6.8e-07 58.2 111 42.3
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 6.8e-07 58.2 137 29.2
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 8.9e-07 57.8 136 29.4
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 8.9e-07 57.8 118 39.0
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 1.2e-06 57.4 128 35.9
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 1.2e-06 57.4 128 35.9
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 1.2e-06 57.4 128 35.9
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 1.2e-06 57.4 113 39.8
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 1.2e-06 57.4 132 34.8
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 1.5e-06 57.0 145 35.2
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 2.6e-06 56.2 110 34.5
CARHR029930 Cardamine hirsuta HOM05D012212 ORTHO05D006213 3.4e-06 55.8 136 50.0
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 3.4e-06 55.8 119 33.6
Glyma.09G024200 Glycine max HOM05D005932 ORTHO05D006213 3.4e-06 55.8 130 48.5
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 3.4e-06 55.8 124 33.9
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 3.4e-06 55.8 109 39.4
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 4.4e-06 55.5 116 33.6
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 5.8e-06 55.1 137 38.7
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 5.8e-06 55.1 139 37.4
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 7.5e-06 54.7 113 34.5
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 9.8e-06 54.3 132 40.2


User provided reference genes

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