Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 0.0e+00 1555.8 778 100.0
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 0.0e+00 1483.8 778 95.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 0.0e+00 1442.6 778 92.2
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 0.0e+00 1414.4 778 90.6
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 0.0e+00 1377.1 782 88.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1373.6 777 88.5
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 0.0e+00 1371.7 777 88.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 0.0e+00 1370.5 776 88.5
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 0.0e+00 1369.0 786 87.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 0.0e+00 1340.1 775 85.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 0.0e+00 1337.4 802 84.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 0.0e+00 1315.8 776 85.6
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 0.0e+00 1285.8 775 82.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1113.6 775 71.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1113.6 775 71.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1109.0 773 71.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1106.3 780 71.2
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1102.8 772 70.6
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1098.2 778 70.2
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1094.0 778 71.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1093.2 782 70.1
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 771 71.1
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 778 69.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1089.7 778 70.1
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1088.6 786 69.6
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1080.9 778 68.9
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1078.9 778 68.9
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 5.3e-312 1074.3 776 69.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 2.1e-311 1072.0 779 68.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 5.3e-310 1067.4 778 69.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.2e-309 1066.2 796 67.3
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.4e-309 1064.3 789 68.2
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 8.4e-308 1060.1 775 67.9
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.1e-307 1059.7 775 68.0
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.4e-307 1059.3 782 67.5
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.3e-305 1052.7 773 68.0
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 3.0e-305 1051.6 750 70.0
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.3e-304 1048.1 782 68.4
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 5.6e-304 1047.3 775 67.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 9.6e-304 1046.6 778 67.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.1e-302 1043.1 776 67.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.5e-301 1037.7 881 62.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 1.3e-300 1036.2 775 65.7
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 2.2e-300 1035.4 780 65.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 2.9e-300 1035.0 776 66.8
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.6e-298 1029.2 779 65.6
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 3.9e-297 1024.6 794 65.0
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 5.6e-296 1020.8 805 63.4
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.3e-295 1019.6 777 65.3
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 9.0e-294 1013.4 775 65.7
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.8e-293 1010.7 775 65.7
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 771 65.2
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.7e-292 1009.2 594 88.2
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.2e-292 1008.8 781 65.4
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 5.5e-291 1004.2 778 64.8
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 778 64.5
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 3.9e-289 998.0 867 60.1
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 7.4e-288 993.8 780 63.8
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.8e-287 991.9 779 64.6
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.6e-285 983.8 777 63.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.4e-283 979.5 771 63.8
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.5e-283 978.8 774 62.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 4.2e-283 978.0 736 67.4
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 5.5e-283 977.6 780 63.7
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 7.2e-283 977.2 774 62.5
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 1.8e-281 972.6 780 63.1
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 6.7e-281 970.7 782 61.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 6.7e-281 970.7 771 63.6
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.3e-280 968.0 778 63.1
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.4e-278 963.0 778 63.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.0e-277 959.1 781 63.5
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.8e-276 954.9 841 58.6
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 8.5e-276 953.7 773 60.9
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.5e-275 952.2 784 63.1
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 4.2e-275 951.4 779 61.7
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 7.2e-275 950.7 777 62.5
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 6.1e-274 947.6 879 57.0
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 2.6e-272 942.2 722 66.9
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.3e-271 939.9 775 61.5
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 7.7e-269 930.6 776 59.7
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.4e-262 909.1 498 90.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 5.3e-262 907.9 778 59.1
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 8.0e-258 894.0 745 59.5
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.8e-254 882.9 785 58.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 4.1e-254 881.7 787 56.8
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 4.1e-246 855.1 782 57.2
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.2e-242 843.6 780 55.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.8e-239 832.4 772 57.1
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 6.4e-215 751.5 773 50.1
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.1e-195 687.6 531 65.9
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 5.6e-195 685.3 541 65.4
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.2e-184 651.0 479 67.6
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.0e-180 637.9 771 47.2
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-174 617.1 435 69.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.1e-155 554.7 809 40.2
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.2e-152 544.7 795 39.7
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.4e-139 499.6 403 64.0
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 2.5e-134 483.8 507 50.9
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 3.5e-128 463.4 444 60.6
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 4.4e-123 446.4 448 57.6
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.3e-118 429.9 508 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.5e-112 410.2 748 34.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 6.8e-108 396.0 854 31.4
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 2.6e-107 394.0 380 58.7
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.6e-93 348.2 378 50.3
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.3e-84 316.6 256 62.1
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.0e-83 314.7 190 73.2
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 8.4e-74 282.7 266 56.0
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.9e-71 273.9 186 73.7
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 6.9e-68 263.1 198 62.6
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.2e-65 253.8 391 36.8
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.6e-56 225.3 765 26.4
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.7e-46 189.5 174 60.9
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 2.2e-42 178.3 228 41.7
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 5.5e-41 173.7 320 36.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 3.7e-37 161.0 115 64.3
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 3.8e-34 151.0 487 25.3
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.9e-33 148.7 252 37.7
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.1e-30 139.4 164 48.8
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 4.4e-30 137.5 501 24.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.7e-29 134.4 69 87.0
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 3.1e-28 131.3 507 23.3
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.1e-28 131.0 86 69.8
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-27 128.6 87 67.8
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.0e-26 126.3 109 52.3
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.2e-26 125.2 102 62.7
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.5e-26 123.2 90 63.3
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-25 122.9 87 65.5
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.5e-25 122.5 109 51.4
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.1e-24 118.6 84 67.9
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.1e-24 117.1 87 63.2
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.0e-24 116.7 83 68.7
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.0e-23 114.8 61 82.0
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.2e-23 114.0 112 48.2
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-21 109.4 75 66.7
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.7e-21 109.0 61 78.7
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 2.2e-21 108.6 56 82.1
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 1.2e-19 102.8 329 28.3
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.9e-17 95.5 59 71.2
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.9e-17 95.5 61 70.5
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 9.4e-17 93.2 78 53.8
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.8e-15 86.7 55 67.3
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-14 86.3 117 45.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-13 82.0 87 54.0
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 3.7e-13 81.3 80 47.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.5e-11 74.3 55 61.8
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.5e-11 74.3 55 61.8
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.5e-11 74.3 55 58.2
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.7e-11 73.6 55 58.2
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-09 68.9 61 50.8
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.5e-09 67.4 87 43.7
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 8.0e-08 63.5 46 65.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 31 90.3
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 60 51.7
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 9.8e-06 56.6 59 40.7


User provided reference genes

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