Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.3e-258 894.4 426 100.0
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.9e-246 854.7 431 95.8
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 5.5e-237 823.9 426 92.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 9.5e-237 823.2 424 92.7
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 4.0e-235 817.8 422 92.2
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 7.0e-232 807.0 426 91.1
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 9.2e-232 806.6 430 90.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.2e-228 796.2 424 90.1
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.2e-228 796.2 424 90.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 3.4e-226 788.1 426 89.7
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 6.4e-225 783.9 427 88.8
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 4.3e-221 771.2 420 87.4
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 7.6e-202 707.2 404 82.4
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.3e-177 626.7 384 75.0
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.2e-177 625.9 404 72.3
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 6.4e-177 624.4 405 73.1
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.9e-176 622.9 392 73.5
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.9e-176 622.9 405 72.6
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 2.4e-176 622.5 405 72.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 2.4e-176 622.5 380 75.0
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 4.2e-176 621.7 383 74.9
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.6e-175 619.8 421 68.9
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 3.5e-175 618.6 389 74.0
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 3.0e-174 615.5 405 70.4
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.9e-174 615.1 396 69.7
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 3.9e-174 615.1 380 74.2
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 5.1e-174 614.8 429 68.3
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 6.7e-174 614.4 406 71.4
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 8.7e-174 614.0 395 71.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 8.7e-174 614.0 403 71.5
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 3.3e-173 612.1 380 73.4
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-172 610.1 391 72.9
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.7e-172 608.6 378 74.1
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.8e-172 608.2 407 70.3
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 6.2e-172 607.8 382 72.5
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 4.0e-171 605.1 396 71.2
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.3e-171 604.7 400 70.5
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 6.9e-171 604.4 406 70.2
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 2.0e-170 602.8 402 68.4
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 3.4e-170 602.1 426 66.0
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 4.5e-170 601.7 402 70.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 7.6e-170 600.9 410 68.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.0e-169 600.5 420 68.3
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.7e-169 599.7 376 73.4
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 3.8e-169 598.6 396 69.4
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 8.4e-169 597.4 391 71.1
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.5e-168 595.9 378 73.0
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.2e-167 593.6 408 68.6
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 3.0e-166 589.0 389 71.7
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.9e-166 588.6 431 66.8
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 5.1e-166 588.2 419 67.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 5.1e-166 588.2 424 67.2
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 8.7e-166 587.4 377 72.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 8.7e-166 587.4 412 65.8
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.1e-165 587.0 425 64.7
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.5e-165 586.6 430 65.8
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.9e-165 586.3 398 67.6
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.9e-165 586.3 378 70.1
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 3.3e-165 585.5 381 70.6
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 4.3e-165 585.1 406 67.5
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 5.7e-165 584.7 399 67.9
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 5.7e-165 584.7 414 66.9
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 2.8e-164 582.4 380 71.1
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.1e-163 580.5 399 67.9
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.4e-163 580.1 429 64.6
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.8e-163 579.7 420 67.4
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.4e-163 579.3 370 72.7
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 5.3e-163 578.2 405 66.9
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.2e-162 577.0 389 69.4
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.0e-161 573.9 419 65.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.3e-161 573.5 444 63.1
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.0e-161 571.6 429 64.1
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 5.0e-161 571.6 419 65.9
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-160 570.1 397 68.8
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.4e-160 570.1 385 68.6
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.2e-159 567.0 402 65.9
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 6.1e-159 564.7 354 74.0
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.9e-158 562.0 459 61.0
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 4.3e-157 558.5 347 74.9
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 4.8e-156 555.1 416 61.8
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.1e-155 553.9 404 66.3
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.5e-154 550.1 381 68.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.7e-154 547.7 391 67.0
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.7e-148 528.9 389 65.0
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 4.8e-148 528.5 385 64.9
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 6.3e-148 528.1 381 66.7
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 7.0e-147 524.6 418 58.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 9.1e-147 524.2 350 68.6
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.0e-141 506.5 342 70.5
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 7.0e-139 498.0 402 57.2
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 8.5e-137 491.1 365 64.7
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 5.7e-133 478.4 370 60.5
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 6.3e-132 474.9 377 61.8
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 4.1e-123 445.7 410 55.9
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.9e-122 441.8 330 63.6
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 3.8e-121 439.1 300 69.7
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 5.5e-120 435.3 322 65.2
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 9.5e-120 434.5 427 53.4
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.1e-119 433.3 379 54.6
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 3.6e-119 432.6 287 71.8
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 6.8e-118 428.3 460 46.5
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 6.3e-116 421.8 430 48.6
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.1e-90 337.0 229 67.2
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.1e-90 337.0 245 66.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 8.1e-87 325.1 352 47.7
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 6.8e-86 322.0 278 56.1
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 7.1e-83 312.0 298 53.4
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 8.7e-81 305.1 397 42.1
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.1e-80 304.7 179 77.7
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.5e-77 294.3 167 79.6
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.0e-77 293.9 470 40.2
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-77 293.9 247 58.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.6e-66 256.1 146 79.5
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 9.3e-51 205.3 127 77.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 3.0e-49 200.3 217 53.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.1e-49 199.5 139 66.2
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.2e-47 194.1 95 96.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.2e-45 188.3 293 38.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.9e-45 186.0 179 53.1
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.3e-40 170.2 115 71.3
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 9.7e-40 168.7 101 74.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.7e-36 157.9 87 79.3
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.5e-35 154.1 89 73.0
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.5e-35 154.1 102 66.7
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.1e-30 138.7 133 51.9
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 1.7e-28 131.3 80 68.8
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 7.0e-22 109.4 147 42.2
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.9e-19 101.3 206 35.9
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 3.0e-09 67.4 241 29.5
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 5.2e-09 66.6 241 29.0
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 6.8e-09 66.2 219 28.3
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.0e-08 64.7 63 50.8
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 2.6e-08 64.3 238 26.5
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 3.4e-08 63.9 235 24.3
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 4.4e-08 63.5 208 26.0
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 5.7e-08 63.2 350 24.0
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 5.7e-08 63.2 252 24.6
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 5.7e-08 63.2 238 25.6
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 2.2e-07 61.2 251 25.1
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 2.2e-07 61.2 241 28.2
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 2.8e-07 60.8 238 24.4
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 3.7e-07 60.5 234 24.8
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 4.9e-07 60.1 252 24.2
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 4.9e-07 60.1 207 27.1
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 4.9e-07 60.1 267 23.6
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 1.1e-06 58.9 207 26.6
HPP92_010630 Vanilla planifolia HOM05D002999 ORTHO05D003137 1.1e-06 58.9 243 23.0
EL10Ac9g21730 Beta vulgaris HOM05D003825 ORTHO05D004491 1.4e-06 58.5 176 25.6
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.4e-06 58.5 209 24.9
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 1.4e-06 58.5 205 22.9
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 1.8e-06 58.2 206 24.8
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 1.8e-06 58.2 206 24.8
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 1.8e-06 58.2 209 24.4
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 2.4e-06 57.8 206 27.2
SalBow2G3192 Salvia bowleyana HOM05D002999 ORTHO05D003137 2.4e-06 57.8 376 20.7
Sc19g0004770 Simmondsia chinensis HOM05D002999 ORTHO05D003137 2.4e-06 57.8 247 25.5
Manes.05G070800 Manihot esculenta HOM05D002999 ORTHO05D003137 3.1e-06 57.4 238 23.5
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 4.1e-06 57.0 206 26.7
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 4.1e-06 57.0 205 25.4
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 4.1e-06 57.0 238 24.8
Nitab4.5_0000295g0130 Nicotiana tabacum HOM05D002999 ORTHO05D003137 4.1e-06 57.0 239 24.3
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 5.4e-06 56.6 205 25.9
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 7.0e-06 56.2 205 25.4
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 7.0e-06 56.2 206 24.8
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 7.0e-06 56.2 206 26.7
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 7.0e-06 56.2 206 26.7
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 7.0e-06 56.2 205 25.4
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 7.0e-06 56.2 244 22.1
Cc02_g17630 Coffea canephora HOM05D003825 ORTHO05D004491 7.0e-06 56.2 207 24.6
Lalb_Chr02g0142981 Lupinus albus HOM05D002999 ORTHO05D003137 7.0e-06 56.2 238 25.6
TWI59G0608 Tripterygium wilfordii HOM05D002999 ORTHO05D003137 7.0e-06 56.2 277 22.7
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 9.1e-06 55.8 205 24.9
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 9.1e-06 55.8 241 24.9
GSVIVG01031958001 Vitis vinifera HOM05D003825 ORTHO05D004491 9.1e-06 55.8 207 25.1


User provided reference genes

Program Settings